Os01g0110700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Phosphoenolpyruvate carboxylase (EC 4.1.1.31).
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Os01g0110700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Phosphoenolpyruvate carboxylase (EC 4.1.1.31).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 123.67 | 0.523 | 5.27 | -0.342 | 1.44 | -3.4 | -0.0909 | -1.34 | 1.03 | 7.78 | 25.1 | 5006 | -- | -- |
| 125.02 | 0.521 | 5.31 | -0.52 | 1.46 | -3.15 | -0.0517 | -- | 1 | 7.78 | 25.99 | 5032 | -- | -- |
| 123.59 | 0.518 | 5.27 | -0.32 | 1.44 | -3.44 | -- | -1.52 | 1.03 | 7.76 | 24.82 | 5029 | -- | -- |
| 125.03 | 0.521 | 5.31 | -0.537 | 1.45 | -3.14 | -- | -- | 1 | 7.78 | 25.99 | 5031 | -- | -- |
| 225.34 | 0.699 | 5.3 | -0.235 | -- | -3.35 | -- | -1.66 | 1.05 | -- | 24.51 | 4385 | -- | -- |
| 275.79 | 0.779 | 5.14 | 1.05 | 1.4 | -- | -0.207 | -- | 1.78 | 7.49 | -- | -- | -- | -- |
| 275.91 | 0.778 | 5.14 | 1.05 | 1.4 | -- | -- | -- | 1.78 | 7.49 | -- | -- | -- | -- |
| 226.94 | 0.702 | 5.35 | -0.487 | -- | -3.07 | -- | -- | 1.02 | -- | 25.37 | 4386 | -- | -- |
| 129.99 | 0.531 | 5.28 | -- | 1.44 | -2.79 | -- | -- | 1.13 | 7.71 | 26.54 | 4890 | -- | -- |
| 380.55 | 0.912 | 5.17 | 1.07 | -- | -- | -- | -- | 1.8 | -- | -- | -- | -- | -- |
| 304.82 | 0.817 | 5.16 | -- | 1.41 | -- | -- | -- | 1.66 | 7.44 | -- | -- | -- | -- |
| 230.96 | 0.708 | 5.32 | -- | -- | -2.77 | -- | -- | 1.15 | -- | 26.81 | 4364 | -- | -- |
| 410.68 | 0.946 | 5.2 | -- | -- | -- | -- | -- | 1.68 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 116.39 | radiation | 1 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 2 | 116.42 | radiation | 1 | 43200 | > th | dose independent | rect. | 17 | 12 |
| 3 | 116.68 | radiation | 1 | 43200 | > th | dose independent | rect. | 17 | 2 |
| 13 | 117.48 | radiation | 1 | 43200 | < th | dose independent | rect. | 17 | 12 |
| 14 | 117.68 | radiation | 1 | 43200 | < th | dose independent | rect. | 17 | 2 |
| 19 | 117.70 | radiation | 1 | 43200 | < th | dose independent | rect. | 17 | 10 |
| 24 | 117.74 | temperature | 25 | 4320 | < th | dose dependent | rect. | 5 | 2 |
| 27 | 117.88 | temperature | 20 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 34 | 118.19 | temperature | 25 | 4320 | < th | dose dependent | rect. | 2 | 6 |
| 35 | 118.20 | radiation | 1 | 43200 | > th | dose independent | rect. | 8 | 21 |
| 37 | 118.21 | radiation | 1 | 43200 | < th | dose independent | rect. | 8 | 21 |
| 56 | 118.34 | temperature | 15 | 4320 | > th | dose dependent | rect. | 5 | 2 |
| 57 | 118.39 | radiation | 1 | 43200 | > th | dose independent | rect. | 8 | 11 |
| 68 | 118.43 | radiation | 1 | 43200 | < th | dose independent | rect. | 8 | 11 |
| 71 | 118.43 | radiation | 1 | 43200 | < th | dose independent | rect. | 8 | 14 |
| 124 | 118.67 | radiation | 1 | 43200 | > th | dose independent | rect. | 17 | 21 |
| 142 | 118.74 | radiation | 1 | 43200 | < th | dose independent | rect. | 17 | 22 |
| 145 | 118.76 | radiation | 1 | 43200 | < th | dose independent | sin | 16 | NA |
| 160 | 118.78 | radiation | 1 | 43200 | < th | dose dependent | rect. | 9 | 20 |
| 168 | 118.80 | radiation | 1 | 43200 | < th | dose dependent | rect. | 9 | 10 |
| 172 | 118.81 | radiation | 1 | 43200 | < th | dose dependent | rect. | 9 | 13 |
| 183 | 118.83 | radiation | 1 | 43200 | > th | dose independent | sin | 15 | NA |
| 203 | 118.88 | radiation | 1 | 43200 | < th | dose dependent | rect. | 15 | 4 |
| 227 | 118.93 | radiation | 1 | 43200 | < th | dose dependent | rect. | 15 | 12 |
| 242 | 118.95 | radiation | 1 | 43200 | < th | dose dependent | rect. | 14 | 15 |
| 249 | 118.97 | radiation | 1 | 43200 | < th | dose dependent | sin | 16 | NA |
| 367 | 119.24 | radiation | 1 | 43200 | > th | dose independent | rect. | 14 | 23 |
| 412 | 119.31 | radiation | 1 | 43200 | < th | dose independent | rect. | 14 | 23 |
| 431 | 119.37 | radiation | 1 | 43200 | > th | dose independent | no | NA | NA |
| 432 | 119.37 | radiation | 1 | 43200 | > th | dose independent | rect. | 4 | 15 |
| 482 | 119.38 | radiation | 1 | 43200 | < th | dose independent | rect. | 3 | 16 |
| 503 | 119.39 | radiation | 1 | 43200 | < th | dose independent | no | NA | NA |
| 529 | 119.39 | radiation | 1 | 43200 | < th | dose independent | rect. | 4 | 23 |
| 538 | 119.39 | radiation | 1 | 43200 | < th | dose dependent | rect. | 2 | 16 |
| 550 | 119.40 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 14 |
| 554 | 119.41 | radiation | 1 | 43200 | > th | dose independent | rect. | 17 | 15 |
| 560 | 119.41 | radiation | 1 | 43200 | < th | dose dependent | rect. | 14 | 23 |
| 578 | 119.42 | radiation | 1 | 43200 | < th | dose dependent | rect. | 21 | 21 |
| 601 | 119.47 | temperature | 10 | 43200 | > th | dose dependent | rect. | 4 | 1 |
| 634 | 119.51 | radiation | 1 | 43200 | > th | dose independent | rect. | 10 | 23 |
| 692 | 119.54 | radiation | 1 | 43200 | < th | dose dependent | no | NA | NA |
| 706 | 119.55 | temperature | 20 | 43200 | < th | dose dependent | sin | 7 | NA |
| 834 | 119.74 | temperature | 20 | 43200 | > th | dose independent | rect. | 4 | 10 |
| 836 | 119.74 | humidity | 90 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 838 | 119.75 | temperature | 20 | 43200 | < th | dose independent | rect. | 4 | 10 |
| 844 | 119.76 | temperature | 20 | 43200 | > th | dose independent | rect. | 5 | 8 |