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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0110200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.93 (0.0833) R2 : 0.599
β1 : -7.42 (0.321) R2dD : 0.562 R2D : 0.395
β2 : 1.08 (0.209) R2dC : 0.0233 R2C : -0.00879
β3 : -2.15 (0.238) R2dE : 0.095 R2E : 0.021
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 5.86 (0.889) R2dD*E : 0.0496 R2D*E : -0.148
γ1 : -2.23 (0.192) R2dN8 : 0.194 R2N8 : -0.0623
σ : 1.53
deviance : 1075.62
__
_____
C
peak time of C : 7.73
E
wheather : radiation
threshold : 9.988
memory length : 1433
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 15.1
open length of G : 1.4

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
1079.47 1.54 5.93 -7.46 1.08 -2.15 0.399 5.79 -2.2 7.63 10 1435 15.1 1.25
1173.64 1.6 5.97 -6.72 1.08 -1.77 0.565 -- -2.09 7.82 9.35 1434 15.1 1.57
1075.62 1.53 5.93 -7.42 1.08 -2.15 -- 5.86 -2.23 7.73 9.988 1433 15.1 1.4
1173.48 1.6 5.98 -6.66 1.14 -1.74 -- -- -2.06 8.16 9.347 1433 15.1 1.6
1136.47 1.57 5.93 -7.4 -- -2.15 -- 6.02 -2.2 -- 9.989 1435 15.1 1.42
1306.75 1.69 5.84 -6.98 1.08 -- 0.445 -- -1.45 7.54 -- -- -- --
1307.19 1.69 5.84 -6.96 1.08 -- -- -- -1.45 7.69 -- -- -- --
1240.43 1.64 5.97 -6.63 -- -1.74 -- -- -2.05 -- 9.355 1435 15.1 1.58
1892.1 2.03 5.92 -- 1.33 -5.38 -- -- -1.83 8.15 9.78 7166 16.4 2.15
1369.97 1.73 5.87 -6.95 -- -- -- -- -1.44 -- -- -- -- --
2585.58 2.38 5.67 -- 1.03 -- -- -- -0.676 8.16 -- -- -- --
1473.08 1.79 5.65 -- -- -5.95 -- -- -0.537 -- 9.1 32263 16.4 2.38
2644.21 2.4 5.7 -- -- -- -- -- -0.665 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 1078.13 wind 1.0 14400 < th dose dependent rect. 1 1
2 1080.57 atmosphere 995.0 43200 > th dose independent rect. 18 16
3 1081.59 atmosphere 995.0 43200 < th dose independent rect. 18 15
5 1082.41 atmosphere 995.0 43200 < th dose independent sin 10 NA
6 1082.75 atmosphere 995.0 43200 > th dose independent sin 9 NA
8 1084.18 atmosphere 995.0 43200 < th dose dependent sin 12 NA
10 1085.83 atmosphere 995.0 43200 < th dose dependent sin 14 NA
14 1088.16 radiation 10.0 1440 < th dose independent rect. 15 1
15 1090.55 atmosphere 995.0 43200 < th dose dependent rect. 13 17
19 1093.44 wind 1.0 14400 < th dose dependent rect. 1 3
25 1095.74 atmosphere 995.0 43200 < th dose independent rect. 21 12
28 1095.94 wind 1.0 14400 < th dose independent rect. 1 1
47 1104.74 atmosphere 995.0 43200 < th dose dependent rect. 16 16
48 1105.18 atmosphere 995.0 43200 > th dose independent rect. 3 5
53 1106.90 atmosphere 995.0 43200 < th dose independent rect. 2 6
55 1107.22 atmosphere 995.0 43200 < th dose dependent rect. 2 6
60 1107.83 atmosphere 995.0 43200 < th dose dependent rect. 18 5
73 1109.99 wind 3.0 4320 < th dose dependent rect. 6 1
76 1110.12 atmosphere 995.0 43200 > th dose independent rect. 19 3
86 1111.61 wind 1.0 14400 > th dose independent rect. 1 1
89 1112.16 wind 1.0 14400 < th dose independent rect. 24 3
92 1112.37 atmosphere 995.0 43200 < th dose independent rect. 21 1
104 1112.37 atmosphere 995.0 43200 < th dose dependent rect. 21 1
118 1112.49 atmosphere 995.0 43200 < th dose dependent rect. 21 11
145 1116.60 wind 3.0 14400 > th dose independent rect. 6 4
147 1116.77 wind 3.0 14400 > th dose independent rect. 8 1
151 1117.18 wind 3.0 14400 < th dose independent rect. 6 1
161 1118.33 wind 3.0 14400 > th dose independent rect. 6 1
164 1118.91 wind 3.0 14400 < th dose independent rect. 6 4
180 1120.85 wind 3.0 14400 < th dose dependent rect. 6 3
182 1121.32 wind 9.0 4320 < th dose dependent rect. 6 1
183 1121.45 wind 1.0 14400 > th dose independent rect. 14 1
185 1121.81 wind 3.0 14400 < th dose independent rect. 8 1
198 1123.97 atmosphere 995.0 43200 < th dose dependent rect. 17 9
217 1125.13 radiation 10.0 1440 < th dose independent rect. 15 13
222 1125.33 wind 1.0 14400 < th dose dependent rect. 14 1
223 1125.36 radiation 10.0 1440 < th dose independent rect. 15 10
230 1126.08 radiation 10.0 1440 < th dose independent rect. 15 7
235 1126.28 atmosphere 995.0 43200 < th dose independent rect. 18 10
237 1126.39 radiation 10.0 1440 < th dose dependent rect. 11 19
244 1126.77 radiation 10.0 1440 < th dose dependent rect. 11 17
245 1126.80 radiation 10.0 1440 < th dose dependent rect. 11 7
250 1126.95 radiation 10.0 1440 < th dose dependent rect. 11 14
260 1127.52 radiation 10.0 1440 < th dose dependent rect. 11 11
270 1128.14 wind 1.0 14400 < th dose independent rect. 14 1
279 1128.51 wind 5.0 14400 < th dose dependent rect. 8 1
311 1130.58 wind 1.0 4320 > th dose dependent rect. 6 1
321 1131.13 radiation 10.0 1440 < th dose dependent sin 19 NA
454 1137.74 wind 3.0 14400 < th dose independent rect. 22 2
462 1138.08 atmosphere 995.0 43200 > th dose independent rect. 5 1
467 1138.16 wind 1.0 14400 > th dose independent rect. 24 3
469 1138.46 wind 3.0 14400 > th dose independent rect. 22 2
495 1139.81 wind 1.0 4320 > th dose dependent rect. 5 4
497 1139.93 radiation 40.0 43200 > th dose independent rect. 7 1
513 1139.93 radiation 40.0 43200 > th dose dependent rect. 7 1
582 1142.73 atmosphere 995.0 43200 < th dose independent rect. 1 1
609 1142.73 atmosphere 995.0 43200 < th dose dependent rect. 1 1
646 1143.37 radiation 10.0 1440 < th dose independent rect. 11 7
688 1145.91 wind 1.0 4320 > th dose dependent rect. 8 1
691 1146.02 radiation 20.0 1440 < th dose dependent rect. 11 1
693 1146.30 radiation 10.0 1440 < th dose independent rect. 11 17
695 1146.43 radiation 10.0 1440 < th dose independent rect. 11 14
705 1146.80 radiation 10.0 1440 < th dose independent rect. 11 11
737 1149.37 radiation 10.0 1440 < th dose independent sin 16 NA
742 1149.66 wind 3.0 14400 < th dose independent rect. 22 12
788 1151.24 wind 3.0 14400 > th dose independent rect. 22 12
848 1153.37 radiation 10.0 1440 > th dose independent rect. 11 1
866 1153.76 wind 5.0 14400 < th dose dependent rect. 22 2
898 1155.64 humidity 90.0 14400 > th dose dependent rect. 12 1
899 1155.64 wind 1.0 14400 < th dose dependent rect. 13 20
912 1156.18 wind 3.0 14400 < th dose dependent rect. 1 9
948 1157.65 precipitation 0.1 43200 > th dose independent rect. 11 2
949 1157.65 precipitation 0.1 43200 > th dose dependent rect. 11 2
950 1157.65 wind 1.0 14400 < th dose dependent rect. 22 11