Os01g0109700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Paired amphipathic helix protein SIN3.
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Os01g0109700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Paired amphipathic helix protein SIN3.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 19.19 | 0.206 | 10.5 | 0.69 | 0.36 | 0.305 | -0.728 | 0.749 | 0.192 | 0.867 | 21.6 | 1425 | -- | -- |
| 20.36 | 0.21 | 10.5 | 0.502 | 0.368 | 0.276 | -0.751 | -- | 0.144 | 0.504 | 21.8 | 1164 | -- | -- |
| 21.3 | 0.215 | 10.5 | 0.702 | 0.365 | 0.308 | -- | 0.746 | 0.193 | 0.734 | 21.7 | 1691 | -- | -- |
| 22.15 | 0.219 | 10.5 | 0.464 | 0.338 | 0.289 | -- | -- | 0.149 | 0.7 | 21.4 | 1056 | -- | -- |
| 28.36 | 0.248 | 10.5 | 0.641 | -- | 0.378 | -- | 0.457 | 0.172 | -- | 21.8 | 987 | -- | -- |
| 22.62 | 0.223 | 10.5 | 0.591 | 0.367 | -- | -0.719 | -- | 0.224 | 0.904 | -- | -- | -- | -- |
| 24.78 | 0.233 | 10.5 | 0.618 | 0.369 | -- | -- | -- | 0.228 | 0.721 | -- | -- | -- | -- |
| 28.42 | 0.248 | 10.5 | 0.514 | -- | 0.351 | -- | -- | 0.103 | -- | 24.78 | 960 | -- | -- |
| 27.11 | 0.242 | 10.5 | -- | 0.314 | 0.504 | -- | -- | 0.067 | 0.715 | 20 | 2578 | -- | -- |
| 33.28 | 0.27 | 10.5 | 0.631 | -- | -- | -- | -- | 0.235 | -- | -- | -- | -- | -- |
| 34.83 | 0.276 | 10.5 | -- | 0.378 | -- | -- | -- | 0.159 | 0.797 | -- | -- | -- | -- |
| 34.01 | 0.272 | 10.5 | -- | -- | 0.574 | -- | -- | 0.0617 | -- | 20 | 2502 | -- | -- |
| 43.77 | 0.309 | 10.5 | -- | -- | -- | -- | -- | 0.165 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 18.87 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 5 | 15 |
| 2 | 18.95 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 3 | 15 |
| 4 | 19.00 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 7 | 20 |
| 6 | 19.03 | temperature | 20.0 | 270 | > th | dose independent | rect. | 3 | 15 |
| 7 | 19.04 | temperature | 20.0 | 270 | > th | dose independent | rect. | 12 | 20 |
| 8 | 19.06 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 2 | 5 |
| 14 | 19.13 | temperature | 30.0 | 270 | < th | dose independent | rect. | 8 | 4 |
| 18 | 19.17 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 5 | 15 |
| 19 | 19.18 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 24 | 21 |
| 26 | 19.21 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 20 | 9 |
| 27 | 19.21 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 20 | 9 |
| 35 | 19.23 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 21 | 6 |
| 39 | 19.24 | wind | 9.0 | 4320 | < th | dose independent | rect. | 6 | 3 |
| 41 | 19.24 | temperature | 30.0 | 270 | < th | dose independent | rect. | 7 | 6 |
| 42 | 19.24 | radiation | 1.0 | 270 | > th | dose independent | rect. | 7 | 7 |
| 48 | 19.25 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 7 | 6 |
| 52 | 19.26 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 21 | 22 |
| 54 | 19.27 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 8 | 3 |
| 63 | 19.27 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 6 | 23 |
| 72 | 19.29 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 16 | 21 |
| 88 | 19.30 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 4 | 23 |
| 92 | 19.31 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 5 | 3 |
| 96 | 19.31 | temperature | 25.0 | 720 | < th | dose dependent | no | NA | NA |
| 105 | 19.32 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 19 | 20 |
| 114 | 19.33 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 21 | 18 |
| 125 | 19.34 | humidity | 50.0 | 270 | > th | dose independent | rect. | 8 | 4 |
| 133 | 19.35 | humidity | 80.0 | 10 | < th | dose independent | rect. | 1 | 13 |
| 137 | 19.35 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 139 | 19.35 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 21 | 18 |
| 145 | 19.36 | wind | 9.0 | 30 | < th | dose independent | rect. | 20 | 9 |
| 146 | 19.36 | temperature | 10.0 | 30 | > th | dose independent | rect. | 20 | 9 |
| 147 | 19.36 | temperature | 30.0 | 30 | < th | dose independent | rect. | 20 | 9 |
| 148 | 19.36 | humidity | 50.0 | 30 | > th | dose independent | rect. | 20 | 9 |
| 151 | 19.36 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 20 | 9 |
| 152 | 19.36 | radiation | 1.0 | 30 | < th | dose independent | rect. | 20 | 9 |
| 157 | 19.36 | temperature | 10.0 | 30 | > th | dose independent | rect. | 5 | 15 |
| 159 | 19.36 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 5 | 15 |
| 162 | 19.36 | radiation | 10.0 | 30 | < th | dose dependent | rect. | 20 | 9 |
| 172 | 19.37 | radiation | 1.0 | 270 | > th | dose independent | rect. | 8 | 4 |
| 175 | 19.37 | temperature | 25.0 | 720 | < th | dose dependent | sin | 2 | NA |
| 177 | 19.37 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 5 | 3 |
| 181 | 19.37 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 23 | 16 |
| 192 | 19.38 | wind | 9.0 | 270 | < th | dose independent | rect. | 8 | 4 |
| 194 | 19.38 | humidity | 80.0 | 10 | < th | dose independent | rect. | 8 | 6 |
| 198 | 19.38 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 22 | 10 |
| 207 | 19.39 | humidity | 80.0 | 10 | < th | dose independent | rect. | 22 | 16 |
| 212 | 19.39 | radiation | 20.0 | 30 | < th | dose dependent | rect. | 5 | 15 |
| 215 | 19.39 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 12 | 20 |
| 218 | 19.40 | temperature | 10.0 | 270 | > th | dose independent | rect. | 8 | 4 |
| 219 | 19.40 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 8 | 4 |
| 220 | 19.40 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 8 | 4 |
| 221 | 19.40 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 8 | 4 |
| 222 | 19.40 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 17 | 10 |
| 227 | 19.40 | temperature | 10.0 | 270 | > th | dose independent | rect. | 12 | 20 |
| 228 | 19.40 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 8 | 4 |
| 230 | 19.40 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 17 | 10 |
| 234 | 19.40 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 8 | 19 |
| 240 | 19.41 | wind | 9.0 | 270 | < th | dose independent | rect. | 12 | 20 |
| 241 | 19.41 | humidity | 70.0 | 270 | > th | dose dependent | rect. | 2 | 6 |
| 253 | 19.42 | humidity | 80.0 | 270 | > th | dose dependent | rect. | 3 | 4 |
| 255 | 19.42 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 17 | 9 |
| 256 | 19.42 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 17 | 10 |
| 302 | 19.44 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 24 | 1 |
| 312 | 19.45 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 8 | 6 |
| 314 | 19.45 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 17 | 10 |
| 315 | 19.45 | radiation | 10.0 | 270 | < th | dose independent | rect. | 17 | 10 |
| 316 | 19.45 | wind | 9.0 | 30 | < th | dose independent | rect. | 5 | 15 |
| 318 | 19.45 | radiation | 40.0 | 90 | < th | dose independent | rect. | 14 | 18 |
| 320 | 19.45 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 24 | 1 |
| 323 | 19.45 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 8 | 6 |
| 337 | 19.46 | wind | 9.0 | 90 | < th | dose independent | rect. | 14 | 18 |
| 361 | 19.47 | wind | 9.0 | 90 | < th | dose independent | rect. | 8 | 6 |
| 382 | 19.48 | temperature | 10.0 | 90 | > th | dose independent | rect. | 8 | 6 |
| 383 | 19.48 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 8 | 6 |
| 384 | 19.48 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 8 | 6 |
| 391 | 19.48 | temperature | 10.0 | 90 | > th | dose independent | rect. | 14 | 18 |
| 421 | 19.49 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 23 | 3 |
| 449 | 19.50 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 23 | 3 |
| 466 | 19.51 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 5 | 15 |
| 483 | 19.51 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 5 | 15 |
| 516 | 19.53 | temperature | 25.0 | 1440 | < th | dose dependent | sin | 16 | NA |
| 537 | 19.54 | humidity | 60.0 | 270 | > th | dose independent | rect. | 18 | 9 |
| 539 | 19.54 | temperature | 10.0 | 270 | > th | dose independent | rect. | 17 | 10 |
| 540 | 19.54 | temperature | 30.0 | 270 | < th | dose independent | rect. | 17 | 10 |
| 546 | 19.54 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 14 |
| 547 | 19.54 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 3 | 14 |
| 551 | 19.54 | temperature | 15.0 | 720 | > th | dose dependent | sin | 6 | NA |
| 555 | 19.54 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 21 | 3 |
| 570 | 19.55 | wind | 1.0 | 270 | > th | dose independent | rect. | 8 | 4 |
| 572 | 19.55 | wind | 9.0 | 270 | < th | dose independent | rect. | 17 | 10 |
| 599 | 19.56 | wind | 3.0 | 14400 | < th | dose independent | rect. | 22 | 1 |
| 606 | 19.56 | humidity | 80.0 | 270 | > th | dose dependent | rect. | 5 | 1 |
| 635 | 19.57 | temperature | 30.0 | 270 | < th | dose independent | rect. | 19 | 17 |
| 667 | 19.58 | wind | 1.0 | 90 | > th | dose independent | rect. | 8 | 6 |
| 702 | 19.59 | humidity | 50.0 | 90 | > th | dose independent | rect. | 14 | 18 |
| 706 | 19.59 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 23 | 4 |
| 742 | 19.60 | wind | 9.0 | 270 | < th | dose independent | rect. | 3 | 14 |
| 774 | 19.61 | humidity | 80.0 | 10 | < th | dose independent | rect. | 6 | 8 |
| 782 | 19.61 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 20 | 5 |
| 808 | 19.62 | humidity | 90.0 | 270 | < th | dose independent | rect. | 8 | 4 |
| 815 | 19.62 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 9 | 6 |
| 818 | 19.62 | humidity | 80.0 | 270 | > th | dose independent | rect. | 2 | 6 |
| 827 | 19.62 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 15 | 18 |
| 865 | 19.63 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 2 | 6 |
| 879 | 19.63 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 4 | 5 |
| 900 | 19.64 | wind | 3.0 | 14400 | > th | dose independent | rect. | 22 | 1 |
| 904 | 19.64 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 21 | 9 |
| 907 | 19.64 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 21 | 9 |
| 911 | 19.64 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 21 | 9 |
| 917 | 19.64 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 21 | 9 |
| 919 | 19.64 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 21 | 9 |
| 928 | 19.64 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 9 | 14 |
| 929 | 19.64 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 6 | 15 |
| 933 | 19.64 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 5 | 18 |
| 958 | 19.65 | wind | 1.0 | 10 | > th | dose independent | rect. | 8 | 6 |
| 996 | 19.66 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 19 | 17 |
| 997 | 19.66 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 5 | 18 |