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Os01g0109000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Group 3 LEA (Type I) protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.4 (0.0269) R2 : 0.672
β1 : -1.6 (0.0988) R2dD : 0.197 R2D : 0.206
β2 : 1.57 (0.0672) R2dC : 0.393 R2C : 0.373
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.469 (0.0576) R2dN8 : 0.0641 R2N8 : 0.0944
σ : 0.507
deviance : 117.22
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_____
C
peak time of C : 3.14
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
95.04 0.458 10.5 -2.2 1.59 -0.137 1.19 3.9 0.299 3.07 0.4901 1448 -- --
109.03 0.486 10.4 -1.76 1.5 0.343 1.28 -- 0.53 3.02 20 7803 -- --
96.69 0.458 10.5 -2.16 1.63 -0.116 -- 4.17 0.307 3.12 0.4891 1556 -- --
111.06 0.491 10.3 -1.47 1.18 0.558 -- -- 0.602 3.28 13.73 340 -- --
122.55 0.516 10.5 -1.52 -- 1.39 -- 1.86 0.545 -- 2.34 406 -- --
111.67 0.495 10.4 -1.58 1.56 -- 1.3 -- 0.477 3.09 -- -- -- --
117.22 0.507 10.4 -1.6 1.57 -- -- -- 0.469 3.14 -- -- -- --
120.7 0.512 10.4 -1.69 -- 1.46 -- -- 0.522 -- 6.15 401 -- --
168.1 0.604 10.3 -- 0.674 1.02 -- -- 0.75 3.17 11.42 361 -- --
257.48 0.75 10.4 -1.54 -- -- -- -- 0.51 -- -- -- -- --
185.11 0.636 10.3 -- 1.54 -- -- -- 0.648 3.14 -- -- -- --
173.37 0.613 10.3 -- -- 1.63 -- -- 0.832 -- 10.07 393 -- --
319.89 0.835 10.3 -- -- -- -- -- 0.681 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 95.21 radiation 1.0 1440 < th dose dependent rect. 18 23
2 95.27 radiation 1.0 1440 < th dose dependent rect. 10 22
4 95.35 radiation 1.0 1440 < th dose dependent rect. 12 20
13 95.51 radiation 1.0 1440 < th dose dependent no NA NA
14 95.51 radiation 1.0 1440 < th dose dependent rect. 4 17
40 95.51 radiation 1.0 1440 < th dose dependent rect. 15 23
41 95.51 radiation 1.0 1440 < th dose dependent rect. 20 23
45 95.52 radiation 1.0 1440 < th dose dependent rect. 4 15
104 96.04 radiation 1.0 1440 < th dose dependent sin 13 NA
107 96.08 radiation 1.0 1440 < th dose dependent sin 1 NA
141 96.30 atmosphere 995.0 43200 < th dose dependent sin 2 NA
145 96.38 atmosphere 995.0 43200 < th dose dependent rect. 5 20
146 96.39 radiation 1.0 1440 < th dose independent rect. 18 23
148 96.40 temperature 20.0 1440 < th dose independent rect. 9 16
153 96.43 temperature 20.0 1440 < th dose independent sin 19 NA
154 96.44 radiation 1.0 1440 > th dose independent rect. 18 23
157 96.45 atmosphere 995.0 43200 < th dose dependent rect. 7 18
161 96.48 radiation 1.0 1440 < th dose independent rect. 10 22
164 96.51 temperature 20.0 1440 > th dose independent sin 19 NA
170 96.53 atmosphere 995.0 43200 < th dose dependent rect. 3 13
172 96.54 radiation 1.0 1440 > th dose independent rect. 10 22
175 96.56 temperature 20.0 1440 > th dose independent rect. 9 16
179 96.57 radiation 1.0 1440 < th dose independent rect. 12 21
183 96.59 radiation 1.0 1440 < th dose independent rect. 12 23
186 96.60 radiation 1.0 1440 < th dose independent rect. 1 20
189 96.61 radiation 1.0 1440 < th dose independent rect. 5 16
190 96.61 radiation 1.0 1440 < th dose independent rect. 2 17
204 96.61 radiation 1.0 1440 < th dose independent rect. 20 23
209 96.62 radiation 1.0 1440 < th dose independent no NA NA
211 96.62 radiation 1.0 1440 < th dose independent rect. 5 14
251 96.63 radiation 1.0 1440 > th dose independent rect. 12 21
257 96.65 radiation 1.0 1440 > th dose independent rect. 12 23
272 96.67 radiation 1.0 1440 < th dose independent rect. 15 23
275 96.68 radiation 1.0 1440 > th dose independent no NA NA
277 96.68 radiation 1.0 1440 > th dose independent rect. 5 14
343 96.73 atmosphere 995.0 43200 < th dose dependent rect. 2 16
348 96.74 temperature 20.0 4320 < th dose independent rect. 18 1
349 96.74 radiation 1.0 1440 > th dose independent rect. 15 23
367 96.78 temperature 20.0 1440 < th dose independent rect. 13 11
371 96.79 atmosphere 995.0 43200 < th dose independent rect. 17 5
381 96.80 wind 7.0 43200 > th dose dependent rect. 18 12
383 96.82 wind 9.0 43200 > th dose independent sin 10 NA
386 96.83 wind 9.0 43200 < th dose independent sin 10 NA
395 96.86 atmosphere 995.0 43200 > th dose independent rect. 16 6
397 96.86 wind 7.0 43200 > th dose independent rect. 18 14
422 96.95 temperature 20.0 1440 > th dose independent rect. 13 11
424 96.95 radiation 1.0 1440 < th dose dependent rect. 16 1
428 96.96 wind 7.0 43200 > th dose dependent sin 10 NA
430 96.96 wind 9.0 14400 > th dose dependent rect. 20 16
439 96.98 wind 7.0 43200 < th dose independent rect. 18 14
446 97.00 wind 7.0 43200 > th dose dependent rect. 18 16
448 97.01 radiation 1.0 1440 < th dose independent sin 1 NA
460 97.03 humidity 90.0 720 > th dose dependent rect. 6 18
461 97.04 radiation 1.0 1440 > th dose independent sin 1 NA
469 97.05 wind 7.0 43200 < th dose independent rect. 20 11
480 97.06 atmosphere 995.0 43200 < th dose dependent rect. 17 5
489 97.07 humidity 90.0 720 > th dose dependent rect. 7 16
493 97.08 radiation 1.0 1440 < th dose dependent rect. 15 6
494 97.08 radiation 1.0 1440 < th dose dependent rect. 15 10
500 97.09 radiation 1.0 1440 < th dose dependent rect. 15 4
512 97.10 wind 9.0 14400 > th dose dependent rect. 18 18
524 97.12 atmosphere 995.0 43200 > th dose independent rect. 5 9
571 97.15 radiation 1.0 1440 < th dose independent rect. 16 1
606 97.18 atmosphere 995.0 43200 < th dose independent rect. 16 7
637 97.27 radiation 1.0 1440 > th dose independent rect. 16 1
641 97.28 temperature 20.0 1440 > th dose independent rect. 16 3
738 97.43 radiation 1.0 1440 < th dose independent sin 13 NA
783 97.52 precipitation 0.1 14400 > th dose independent rect. 8 3
787 97.52 precipitation 0.1 14400 > th dose dependent rect. 8 3
806 97.54 radiation 1.0 1440 > th dose independent sin 13 NA
870 97.61 wind 7.0 43200 < th dose independent rect. 20 19
887 97.63 wind 7.0 43200 > th dose independent rect. 21 18
895 97.64 humidity 90.0 720 > th dose dependent sin 21 NA
896 97.64 temperature 10.0 1440 > th dose dependent rect. 11 2
904 97.65 wind 7.0 43200 < th dose independent rect. 1 14
909 97.66 wind 7.0 43200 > th dose independent sin 6 NA
953 97.70 wind 7.0 43200 < th dose independent sin 6 NA
960 97.71 wind 7.0 43200 > th dose independent rect. 1 14
973 97.73 temperature 20.0 1440 < th dose independent rect. 15 5
995 97.75 wind 5.0 43200 > th dose dependent rect. 2 13