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Os01g0108600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Basic helix-loop-helix dimerisation region bHLH domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.9 (0.0254) R2 : 0.425
β1 : -- (--) R2dD : -- R2D : --
β2 : 2.13 (0.123) R2dC : 1.55 R2C : -0.327
β3 : -1.45 (0.12) R2dE : 0.754 R2E : -1.13
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0481 (0.0537) R2dN8 : 0.0013 R2N8 : -0.00463
σ : 0.474
deviance : 103.64
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_____
C
peak time of C : 1.43
E
wheather : radiation
threshold : 0.959
memory length : 90
response mode : < th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 1.92
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
95.89 0.46 10.9 -0.395 2.15 -1.42 -2.65 2.44 -0.0918 1.27 0.9281 84 2.25 --
99.76 0.465 10.9 -0.33 2.13 -1.44 -0.572 -- -0.0774 1.4 0.95 89 1.92 --
101.44 0.469 10.9 -0.329 2.25 -1.48 -- -0.0724 -0.0771 1.5 1.603 101 2.42 --
100.85 0.468 10.9 -0.326 2.14 -1.44 -- -- -0.0815 1.42 0.96 89 1.96 --
136.4 0.544 10.9 -0.396 -- -1.12 -- 0.428 -0.153 -- 10.01 985 1.7 --
124.96 0.524 10.9 -0.361 0.892 -- -0.71 -- 0.0128 23.9 -- -- -- --
127.15 0.528 10.9 -0.333 0.895 -- -- -- 0.0157 23.9 -- -- -- --
127.03 0.525 10.9 -0.42 -- -1.35 -- -- -0.0503 -- 0.03001 1129 2.12 --
103.64 0.474 10.9 -- 2.13 -1.45 -- -- -0.0481 1.43 0.959 90 1.92 --
177.52 0.623 10.9 -0.306 -- -- -- -- 0.0277 -- -- -- -- --
130.07 0.533 10.9 -- 0.89 -- -- -- 0.0528 23.9 -- -- -- --
131.14 0.533 10.9 -- -- -1.36 -- -- 0.0117 -- 0.161 1142 3.02 --
179.99 0.626 10.9 -- -- -- -- -- 0.0617 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 96.17 radiation 1.0 90 < th dose independent sin 8 NA
3 96.64 radiation 1.0 90 < th dose dependent sin 8 NA
5 97.22 radiation 1.0 90 > th dose independent sin 8 NA
9 97.97 humidity 50.0 270 > th dose dependent rect. 19 9
22 100.09 radiation 1.0 90 > th dose independent rect. 4 5
32 100.10 radiation 30.0 270 < th dose independent rect. 4 5
33 100.10 wind 9.0 270 < th dose independent rect. 7 22
36 100.17 wind 9.0 270 < th dose independent rect. 9 19
38 100.39 temperature 10.0 270 > th dose dependent rect. 4 5
42 100.49 radiation 1.0 90 < th dose independent rect. 20 19
54 100.79 humidity 60.0 10 > th dose dependent rect. 20 10
62 101.07 radiation 1.0 90 < th dose dependent rect. 20 19
66 101.16 radiation 40.0 270 < th dose dependent rect. 4 5
74 101.35 precipitation 0.1 270 < th dose independent rect. 3 6
75 101.35 precipitation 0.1 270 < th dose dependent rect. 3 6
76 101.36 humidity 70.0 270 > th dose independent rect. 4 5
120 101.78 radiation 20.0 270 < th dose independent rect. 5 3
157 102.38 radiation 40.0 10 < th dose independent rect. 6 4
160 102.40 radiation 1.0 90 < th dose independent rect. 20 13
161 102.41 wind 7.0 270 < th dose independent rect. 3 6
172 102.56 temperature 10.0 270 > th dose independent rect. 3 6
175 102.56 atmosphere 995.0 270 > th dose independent rect. 3 6
176 102.56 atmosphere 1015.0 270 < th dose independent rect. 3 6
177 102.56 temperature 10.0 270 > th dose independent rect. 9 18
193 102.69 temperature 30.0 270 < th dose independent rect. 4 5
208 102.88 radiation 30.0 270 < th dose independent rect. 15 18
221 102.95 humidity 90.0 30 < th dose independent rect. 17 17
227 103.01 radiation 1.0 90 < th dose dependent rect. 20 12
251 103.16 radiation 40.0 270 < th dose dependent rect. 5 3
255 103.22 precipitation 0.1 270 < th dose independent rect. 5 2
256 103.22 humidity 60.0 10 > th dose independent rect. 6 4
257 103.22 precipitation 0.1 270 < th dose dependent rect. 5 2
265 103.28 radiation 1.0 90 < th dose independent rect. 23 16
267 103.30 wind 1.0 270 > th dose independent rect. 15 17
272 103.33 precipitation 0.1 270 < th dose independent rect. 16 16
273 103.33 precipitation 0.1 270 < th dose dependent rect. 16 16
275 103.35 wind 7.0 270 < th dose independent rect. 5 2
277 103.35 temperature 10.0 270 > th dose independent rect. 5 2
279 103.35 temperature 30.0 270 < th dose independent rect. 5 2
280 103.35 humidity 50.0 270 > th dose independent rect. 5 2
282 103.35 atmosphere 995.0 270 > th dose independent rect. 5 2
283 103.35 atmosphere 1015.0 270 < th dose independent rect. 5 2
285 103.35 temperature 10.0 270 > th dose independent rect. 7 22
288 103.38 precipitation 0.1 270 < th dose independent rect. 9 18
289 103.38 precipitation 0.1 270 < th dose dependent rect. 9 18
297 103.43 humidity 50.0 270 > th dose dependent rect. 4 5
302 103.52 atmosphere 995.0 270 > th dose independent rect. 9 19
320 103.63 wind 9.0 270 < th dose independent rect. 8 8
342 103.81 radiation 1.0 90 < th dose dependent rect. 23 16
351 103.93 humidity 90.0 90 < th dose independent rect. 5 4
355 103.95 radiation 1.0 10 > th dose independent rect. 6 4
357 103.95 wind 9.0 10 < th dose independent rect. 10 20
364 103.98 wind 9.0 270 < th dose independent rect. 23 15
365 103.98 precipitation 0.1 270 < th dose independent rect. 4 17
366 103.98 precipitation 0.1 270 < th dose dependent rect. 4 17
429 104.19 wind 9.0 270 < th dose dependent rect. 5 2
433 104.22 wind 9.0 90 < th dose dependent rect. 20 9
439 104.26 humidity 50.0 270 > th dose dependent rect. 5 2
447 104.31 precipitation 0.1 270 < th dose independent rect. 15 18
448 104.31 precipitation 0.1 270 < th dose dependent rect. 15 18
456 104.38 wind 9.0 270 < th dose independent rect. 21 7
460 104.42 humidity 70.0 270 > th dose dependent rect. 23 3
468 104.48 temperature 10.0 270 > th dose independent rect. 21 7
469 104.48 temperature 30.0 270 < th dose independent rect. 21 7
470 104.48 humidity 50.0 270 > th dose independent rect. 21 7
473 104.48 atmosphere 995.0 270 > th dose independent rect. 21 7
475 104.48 radiation 1.0 270 < th dose independent rect. 21 7
480 104.48 temperature 10.0 270 > th dose independent rect. 4 17
481 104.48 radiation 1.0 270 < th dose dependent rect. 21 7
496 104.54 atmosphere 1015.0 90 < th dose dependent rect. 23 6
497 104.55 humidity 70.0 270 > th dose independent rect. 19 9
503 104.59 precipitation 0.1 270 < th dose independent rect. 14 9
505 104.59 precipitation 0.1 270 < th dose dependent rect. 14 9
508 104.63 humidity 90.0 10 < th dose independent rect. 5 5
543 104.73 atmosphere 1015.0 270 < th dose independent rect. 4 16
560 104.77 radiation 40.0 270 < th dose dependent rect. 15 18
566 104.81 radiation 1.0 270 < th dose dependent rect. 18 10
567 104.84 radiation 20.0 10 < th dose dependent rect. 20 10
570 104.86 atmosphere 995.0 270 > th dose independent rect. 8 8
571 104.86 temperature 10.0 10 > th dose dependent rect. 6 4
574 104.88 temperature 10.0 270 > th dose independent rect. 14 9
575 104.88 temperature 10.0 270 > th dose independent rect. 23 15
576 104.88 atmosphere 995.0 270 > th dose independent rect. 23 15
578 104.90 wind 9.0 270 < th dose dependent rect. 4 4
580 104.92 wind 1.0 270 > th dose independent rect. 5 2
582 104.93 wind 1.0 270 < th dose dependent rect. 24 1
597 105.01 radiation 40.0 90 < th dose independent rect. 5 19
605 105.04 wind 9.0 270 < th dose dependent rect. 9 19
607 105.05 wind 9.0 270 < th dose independent rect. 9 6
613 105.08 wind 1.0 10 > th dose independent rect. 6 4
630 105.12 precipitation 0.1 270 < th dose independent rect. 21 7
632 105.12 precipitation 0.1 270 < th dose dependent rect. 21 7
633 105.13 temperature 10.0 270 > th dose independent rect. 8 8
634 105.13 atmosphere 1015.0 270 < th dose independent rect. 8 8
636 105.13 temperature 10.0 270 > th dose independent rect. 16 16
639 105.14 precipitation 0.1 270 < th dose independent rect. 8 8
640 105.14 precipitation 0.1 270 < th dose dependent rect. 8 8
651 105.18 radiation 40.0 270 < th dose independent rect. 14 9
658 105.21 precipitation 0.1 10 < th dose independent rect. 6 4
670 105.21 precipitation 0.1 10 < th dose dependent rect. 6 4
671 105.21 atmosphere 1015.0 90 < th dose dependent rect. 21 8
674 105.23 temperature 30.0 10 < th dose independent rect. 6 4
713 105.32 wind 1.0 270 > th dose independent rect. 4 4
718 105.33 atmosphere 995.0 270 > th dose independent rect. 7 22
747 105.37 wind 1.0 270 > th dose independent rect. 3 6
748 105.37 wind 1.0 270 > th dose independent rect. 14 9
749 105.37 atmosphere 1015.0 270 < th dose independent rect. 23 15
751 105.39 wind 9.0 10 < th dose independent rect. 6 4
752 105.39 temperature 10.0 10 > th dose independent rect. 6 4
755 105.39 atmosphere 995.0 10 > th dose independent rect. 6 4
756 105.39 atmosphere 1015.0 10 < th dose independent rect. 6 4
760 105.39 temperature 10.0 10 > th dose independent rect. 10 20
763 105.39 atmosphere 1015.0 270 < th dose dependent rect. 21 6
766 105.40 radiation 20.0 90 < th dose independent rect. 5 19
799 105.54 radiation 40.0 90 < th dose dependent rect. 5 19
813 105.57 atmosphere 995.0 10 > th dose independent rect. 10 20
830 105.60 radiation 1.0 90 < th dose dependent rect. 23 9
846 105.66 wind 9.0 90 < th dose dependent rect. 11 18
848 105.67 atmosphere 995.0 270 > th dose independent rect. 16 16
879 105.74 precipitation 0.1 270 < th dose independent rect. 7 22
880 105.74 precipitation 0.1 270 < th dose dependent rect. 7 22
881 105.75 radiation 40.0 10 < th dose dependent rect. 6 5
887 105.76 atmosphere 995.0 270 > th dose independent rect. 4 17
904 105.80 atmosphere 995.0 270 > th dose independent rect. 9 6
919 105.89 humidity 90.0 270 < th dose independent rect. 6 1
922 105.89 humidity 60.0 10 > th dose independent rect. 17 17
924 105.89 atmosphere 995.0 270 > th dose dependent rect. 5 2
933 105.92 wind 9.0 10 < th dose dependent rect. 6 4
949 105.96 temperature 10.0 270 > th dose independent rect. 9 6
950 105.96 atmosphere 1015.0 270 < th dose independent rect. 9 6
951 105.96 temperature 10.0 270 > th dose independent rect. 15 18
967 105.99 radiation 40.0 270 < th dose independent rect. 4 17
971 106.00 precipitation 0.1 270 < th dose independent rect. 9 6
976 106.00 precipitation 0.1 270 < th dose dependent rect. 9 6
993 106.03 atmosphere 1015.0 270 < th dose independent rect. 9 18