Os01g0107700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to LIMONENE cyclase like protein.
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Os01g0107700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to LIMONENE cyclase like protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 46.63 | 0.321 | 8.02 | -1.42 | 0.351 | 0.851 | 0.325 | 0.337 | -0.435 | 22 | 25.44 | 1237 | -- | -- |
| 46.69 | 0.318 | 8.02 | -1.48 | 0.359 | 0.87 | 0.398 | -- | -0.434 | 22.1 | 25.75 | 1234 | -- | -- |
| 46.93 | 0.319 | 8.01 | -1.39 | 0.334 | 0.865 | -- | 0.534 | -0.429 | 21.5 | 25.26 | 1216 | -- | -- |
| 47.01 | 0.319 | 8.03 | -1.52 | 0.345 | 0.901 | -- | -- | -0.448 | 21.6 | 25.6 | 1221 | -- | -- |
| 49.36 | 0.327 | 8.03 | -1.47 | -- | 1.16 | -- | 0.226 | -0.521 | -- | 23.67 | 958 | -- | -- |
| 75.73 | 0.408 | 8.01 | -1.21 | 0.46 | -- | 0.624 | -- | -0.373 | 23.1 | -- | -- | -- | -- |
| 77.24 | 0.412 | 8.01 | -1.24 | 0.462 | -- | -- | -- | -0.374 | 22.7 | -- | -- | -- | -- |
| 49.27 | 0.327 | 8.03 | -1.55 | -- | 1.17 | -- | -- | -0.527 | -- | 23.95 | 966 | -- | -- |
| 102.54 | 0.472 | 7.95 | -- | 0.384 | 0.561 | -- | -- | -0.156 | 21.8 | 28.75 | 1234 | -- | -- |
| 90.4 | 0.444 | 8 | -1.23 | -- | -- | -- | -- | -0.372 | -- | -- | -- | -- | -- |
| 117.66 | 0.507 | 7.98 | -- | 0.453 | -- | -- | -- | -0.236 | 22.5 | -- | -- | -- | -- |
| 108.06 | 0.484 | 7.98 | -- | -- | 0.841 | -- | -- | -0.279 | -- | 25.1 | 940 | -- | -- |
| 130.27 | 0.533 | 7.97 | -- | -- | -- | -- | -- | -0.235 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 46.17 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 12 |
| 4 | 46.37 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 3 |
| 6 | 46.45 | temperature | 10 | 1440 | > th | dose dependent | rect. | 16 | 3 |
| 20 | 46.66 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 19 |
| 22 | 46.69 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 12 |
| 75 | 47.07 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 12 |
| 86 | 47.12 | temperature | 25 | 1440 | > th | dose dependent | rect. | 7 | 16 |
| 162 | 47.28 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 180 | 47.30 | temperature | 25 | 1440 | > th | dose dependent | rect. | 22 | 23 |
| 188 | 47.32 | temperature | 25 | 1440 | > th | dose dependent | rect. | 20 | 23 |
| 212 | 47.37 | temperature | 20 | 1440 | > th | dose dependent | sin | 18 | NA |
| 324 | 47.55 | humidity | 50 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 366 | 47.58 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 526 | 47.75 | humidity | 50 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 627 | 47.86 | temperature | 10 | 1440 | > th | dose dependent | rect. | 10 | 12 |
| 666 | 47.91 | humidity | 50 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 678 | 47.92 | temperature | 10 | 1440 | > th | dose dependent | rect. | 6 | 16 |
| 700 | 47.95 | temperature | 10 | 1440 | > th | dose dependent | sin | 20 | NA |
| 759 | 48.00 | temperature | 25 | 1440 | > th | dose independent | rect. | 6 | 2 |
| 768 | 48.01 | temperature | 25 | 1440 | > th | dose dependent | rect. | 7 | 1 |
| 914 | 48.20 | temperature | 25 | 1440 | > th | dose dependent | rect. | 4 | 4 |
| 937 | 48.23 | temperature | 25 | 1440 | < th | dose independent | rect. | 6 | 2 |
| 956 | 48.25 | radiation | 20 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 981 | 48.26 | temperature | 25 | 1440 | > th | dose dependent | rect. | 3 | 6 |