Os01g0107300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os01g0107300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 340.98 | 0.868 | 1.18 | -4.03 | 0.318 | 236 | -0.411 | 497 | -0.00254 | 20.7 | 2 | 3 | -- | -- |
| -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 359.36 | 0.889 | 3.24 | 0.147 | 0.277 | -- | -0.153 | -- | -0.0327 | 20.1 | -- | -- | -- | -- |
| 359.41 | 0.888 | 3.24 | 0.151 | 0.276 | -- | -- | -- | -0.0334 | 20.4 | -- | -- | -- | -- |
| -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 363.63 | 0.891 | 3.23 | 0.149 | -- | -- | -- | -- | -0.0363 | -- | -- | -- | -- | -- |
| 360.01 | 0.888 | 3.25 | -- | 0.275 | -- | -- | -- | -0.0501 | 20.4 | -- | -- | -- | -- |
| -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 364.22 | 0.891 | 3.24 | -- | -- | -- | -- | -- | -0.0528 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 332.91 | radiation | 1.0 | 720 | < th | dose independent | rect. | 9 | 1 |
| 2 | 332.91 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 9 | 1 |
| 3 | 333.16 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 7 | 10 |
| 4 | 333.32 | radiation | 1.0 | 270 | < th | dose independent | rect. | 8 | 9 |
| 7 | 333.68 | radiation | 1.0 | 720 | < th | dose independent | rect. | 8 | 4 |
| 8 | 333.68 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 8 | 4 |
| 17 | 334.40 | humidity | 80.0 | 270 | > th | dose dependent | rect. | 8 | 9 |
| 38 | 336.90 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 15 | 2 |
| 39 | 337.00 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 13 | 1 |
| 41 | 337.07 | atmosphere | 1015.0 | 1440 | > th | dose independent | rect. | 12 | 1 |
| 44 | 337.07 | atmosphere | 1015.0 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 78 | 337.50 | humidity | 80.0 | 270 | > th | dose independent | rect. | 7 | 10 |
| 80 | 337.52 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 16 | 21 |
| 81 | 337.56 | atmosphere | 1015.0 | 720 | < th | dose independent | rect. | 23 | 6 |
| 84 | 337.63 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 12 | 5 |
| 89 | 337.80 | radiation | 1.0 | 270 | > th | dose independent | rect. | 17 | 23 |
| 99 | 337.97 | humidity | 80.0 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 101 | 337.98 | temperature | 15.0 | 4320 | > th | dose independent | rect. | 15 | 2 |
| 109 | 338.03 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 3 | 9 |
| 117 | 338.28 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 15 | 1 |
| 120 | 338.34 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 8 | 3 |
| 123 | 338.38 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 15 | 1 |
| 126 | 338.43 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 4 | 11 |
| 135 | 338.62 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 5 | 23 |
| 146 | 338.76 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 23 | 13 |
| 159 | 338.91 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 11 | 2 |
| 163 | 338.93 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 10 | 1 |
| 165 | 338.94 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 1 | 11 |
| 178 | 339.14 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 5 | 11 |
| 192 | 339.23 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 24 | 16 |
| 202 | 339.32 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 10 | 10 |
| 209 | 339.38 | humidity | 90.0 | 270 | > th | dose independent | rect. | 9 | 1 |
| 224 | 339.51 | temperature | 10.0 | 270 | > th | dose dependent | sin | 4 | NA |
| 237 | 339.65 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 8 | 12 |
| 242 | 339.69 | temperature | 15.0 | 720 | > th | dose independent | sin | 22 | NA |
| 247 | 339.69 | temperature | 30.0 | 270 | < th | dose dependent | sin | 3 | NA |
| 284 | 339.78 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 6 | 8 |
| 321 | 339.92 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 11 | 9 |
| 330 | 339.96 | atmosphere | 1015.0 | 1440 | > th | dose independent | sin | 23 | NA |
| 346 | 340.02 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 6 | 8 |
| 347 | 340.03 | atmosphere | 1015.0 | 1440 | < th | dose independent | sin | 23 | NA |
| 349 | 340.04 | humidity | 90.0 | 720 | > th | dose independent | rect. | 11 | 2 |
| 357 | 340.06 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 7 | 11 |
| 372 | 340.11 | temperature | 20.0 | 720 | < th | dose dependent | rect. | 12 | 1 |
| 389 | 340.19 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 23 | 1 |
| 392 | 340.19 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 23 | 1 |
| 394 | 340.20 | temperature | 20.0 | 90 | < th | dose dependent | rect. | 10 | 10 |
| 410 | 340.28 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 7 | 3 |
| 412 | 340.28 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 7 | 3 |
| 450 | 340.40 | temperature | 15.0 | 1440 | < th | dose independent | rect. | 5 | 19 |
| 451 | 340.40 | atmosphere | 1015.0 | 1440 | > th | dose dependent | sin | 23 | NA |
| 464 | 340.42 | atmosphere | 1015.0 | 720 | < th | dose independent | rect. | 1 | 4 |
| 490 | 340.47 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 7 | 23 |
| 501 | 340.49 | wind | 9.0 | 270 | > th | dose dependent | rect. | 21 | 13 |
| 503 | 340.49 | wind | 9.0 | 270 | > th | dose dependent | rect. | 19 | 15 |
| 506 | 340.51 | humidity | 90.0 | 270 | > th | dose independent | rect. | 8 | 5 |
| 524 | 340.56 | precipitation | 0.1 | 720 | > th | dose independent | rect. | 1 | 2 |
| 527 | 340.56 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 1 | 2 |
| 535 | 340.57 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 23 | 1 |
| 540 | 340.57 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 23 | 1 |
| 550 | 340.58 | temperature | 15.0 | 270 | > th | dose independent | rect. | 5 | 11 |
| 557 | 340.59 | temperature | 20.0 | 30 | < th | dose dependent | sin | 1 | NA |
| 565 | 340.60 | radiation | 1.0 | 270 | < th | dose independent | rect. | 7 | 22 |
| 594 | 340.64 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 14 | 21 |
| 615 | 340.68 | temperature | 20.0 | 30 | < th | dose dependent | rect. | 1 | 12 |
| 616 | 340.69 | temperature | 15.0 | 90 | > th | dose independent | sin | 5 | NA |
| 618 | 340.70 | atmosphere | 1010.0 | 720 | > th | dose dependent | rect. | 1 | 1 |
| 629 | 340.72 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 9 | 22 |
| 658 | 340.79 | temperature | 20.0 | 270 | < th | dose independent | rect. | 12 | 6 |
| 661 | 340.79 | temperature | 15.0 | 1440 | < th | dose dependent | sin | 22 | NA |
| 665 | 340.80 | temperature | 15.0 | 1440 | < th | dose independent | sin | 21 | NA |
| 666 | 340.80 | precipitation | 0.1 | 720 | > th | dose independent | rect. | 6 | 1 |
| 669 | 340.80 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 6 | 1 |
| 671 | 340.82 | humidity | 50.0 | 10 | < th | dose independent | rect. | 11 | 1 |
| 763 | 340.82 | humidity | 50.0 | 10 | < th | dose dependent | rect. | 11 | 1 |
| 863 | 340.84 | temperature | 20.0 | 270 | < th | dose independent | rect. | 12 | 3 |
| 872 | 340.85 | temperature | 15.0 | 720 | > th | dose independent | rect. | 5 | 8 |
| 874 | 340.85 | temperature | 15.0 | 4320 | < th | dose dependent | rect. | 3 | 1 |
| 898 | 340.89 | wind | 9.0 | 270 | > th | dose independent | rect. | 19 | 15 |
| 909 | 340.90 | temperature | 20.0 | 30 | < th | dose dependent | rect. | 12 | 6 |
| 917 | 340.92 | atmosphere | 1015.0 | 720 | < th | dose independent | rect. | 23 | 9 |
| 932 | 340.94 | temperature | 15.0 | 720 | < th | dose dependent | rect. | 4 | 19 |
| 952 | 340.98 | temperature | 15.0 | 90 | > th | dose independent | no | NA | NA |
| 954 | 340.98 | temperature | 15.0 | 90 | < th | dose independent | sin | 7 | NA |