Os01g0105500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0105500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 181.26 | 0.633 | 5.08 | 0.376 | 0.36 | -0.699 | 2.18 | 0.124 | 0.485 | 11 | 1015 | 5210 | -- | -- |
| 181.32 | 0.627 | 5.08 | 0.349 | 0.36 | -0.69 | 2.18 | -- | 0.479 | 11 | 1015 | 5246 | -- | -- |
| 200.6 | 0.66 | 5.07 | 0.493 | 0.376 | -0.684 | -- | 0.165 | 0.492 | 10 | 1015 | 5442 | -- | -- |
| 200.69 | 0.66 | 5.07 | 0.456 | 0.376 | -0.68 | -- | -- | 0.488 | 9.78 | 1015 | 5479 | -- | -- |
| 208.96 | 0.673 | 5.08 | 0.482 | -- | -0.686 | -- | 0.156 | 0.49 | -- | 1015 | 5405 | -- | -- |
| 200.12 | 0.663 | 5.11 | 0.245 | 0.361 | -- | 2.16 | -- | 0.355 | 11 | -- | -- | -- | -- |
| 219.33 | 0.694 | 5.1 | 0.329 | 0.368 | -- | -- | -- | 0.36 | 9.92 | -- | -- | -- | -- |
| 208.15 | 0.672 | 5.07 | 0.597 | -- | -0.818 | -- | -- | 0.499 | -- | 1013 | 5531 | -- | -- |
| 205.39 | 0.667 | 5.09 | -- | 0.374 | -0.66 | -- | -- | 0.426 | 9.7 | 1015 | 5037 | -- | -- |
| 227.47 | 0.705 | 5.11 | 0.325 | -- | -- | -- | -- | 0.36 | -- | -- | -- | -- | -- |
| 222.18 | 0.697 | 5.11 | -- | 0.367 | -- | -- | -- | 0.323 | 9.85 | -- | -- | -- | -- |
| 213.69 | 0.681 | 5.1 | -- | -- | -0.655 | -- | -- | 0.427 | -- | 1015 | 5038 | -- | -- |
| 230.25 | 0.708 | 5.12 | -- | -- | -- | -- | -- | 0.324 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 177.59 | radiation | 40 | 4320 | < th | dose dependent | rect. | 19 | 10 |
| 2 | 177.66 | radiation | 1 | 270 | < th | dose dependent | rect. | 4 | 14 |
| 6 | 179.09 | radiation | 1 | 270 | < th | dose independent | rect. | 4 | 13 |
| 9 | 179.24 | humidity | 50 | 4320 | > th | dose independent | rect. | 5 | 5 |
| 10 | 179.36 | temperature | 25 | 270 | < th | dose independent | rect. | 11 | 20 |
| 17 | 179.93 | humidity | 50 | 14400 | > th | dose independent | rect. | 8 | 3 |
| 19 | 179.98 | humidity | 50 | 14400 | > th | dose independent | rect. | 22 | 13 |
| 20 | 179.99 | humidity | 50 | 14400 | > th | dose independent | rect. | 19 | 16 |
| 28 | 180.09 | humidity | 50 | 14400 | > th | dose independent | rect. | 3 | 8 |
| 38 | 180.31 | humidity | 50 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 40 | 180.33 | humidity | 50 | 14400 | < th | dose independent | sin | 9 | NA |
| 43 | 180.39 | humidity | 60 | 14400 | < th | dose independent | rect. | 7 | 2 |
| 44 | 180.39 | temperature | 25 | 720 | > th | dose independent | rect. | 15 | 4 |
| 56 | 180.48 | humidity | 50 | 14400 | > th | dose independent | sin | 9 | NA |
| 57 | 180.48 | humidity | 50 | 14400 | < th | dose independent | rect. | 9 | 3 |
| 62 | 180.52 | temperature | 10 | 10 | > th | dose dependent | rect. | 9 | 20 |
| 84 | 180.64 | humidity | 50 | 14400 | > th | dose independent | sin | 4 | NA |
| 106 | 180.76 | humidity | 50 | 14400 | > th | dose independent | rect. | 9 | 8 |
| 124 | 180.79 | humidity | 50 | 14400 | > th | dose independent | rect. | 16 | 23 |
| 131 | 180.81 | humidity | 50 | 14400 | > th | dose independent | rect. | 3 | 14 |
| 132 | 180.81 | humidity | 50 | 14400 | > th | dose independent | rect. | 23 | 18 |
| 134 | 180.81 | humidity | 50 | 14400 | > th | dose independent | rect. | 19 | 22 |
| 142 | 180.83 | humidity | 60 | 14400 | < th | dose dependent | rect. | 20 | 14 |
| 152 | 180.86 | humidity | 50 | 90 | > th | dose dependent | rect. | 4 | 13 |
| 158 | 180.89 | humidity | 60 | 14400 | < th | dose dependent | rect. | 6 | 4 |
| 183 | 180.96 | wind | 9 | 90 | < th | dose dependent | rect. | 17 | 11 |
| 197 | 180.98 | wind | 9 | 90 | < th | dose dependent | rect. | 9 | 19 |
| 217 | 181.02 | humidity | 60 | 14400 | < th | dose dependent | rect. | 9 | 1 |
| 229 | 181.06 | temperature | 25 | 720 | < th | dose independent | rect. | 11 | 13 |
| 235 | 181.07 | humidity | 50 | 14400 | > th | dose independent | rect. | 9 | 20 |
| 248 | 181.10 | humidity | 50 | 14400 | > th | dose independent | rect. | 9 | 14 |
| 260 | 181.11 | temperature | 25 | 720 | > th | dose independent | rect. | 16 | 2 |
| 286 | 181.12 | humidity | 60 | 14400 | < th | dose dependent | sin | 7 | NA |
| 303 | 181.13 | humidity | 50 | 14400 | > th | dose independent | rect. | 3 | 21 |
| 313 | 181.14 | humidity | 50 | 14400 | > th | dose independent | no | NA | NA |
| 372 | 181.18 | temperature | 25 | 90 | < th | dose independent | rect. | 4 | 22 |
| 394 | 181.34 | humidity | 50 | 14400 | > th | dose independent | rect. | 12 | 23 |
| 408 | 181.36 | humidity | 50 | 14400 | < th | dose independent | rect. | 16 | 22 |
| 423 | 181.43 | humidity | 60 | 14400 | < th | dose dependent | rect. | 19 | 20 |
| 424 | 181.44 | humidity | 50 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 429 | 181.46 | humidity | 60 | 14400 | < th | dose dependent | rect. | 7 | 8 |
| 451 | 181.53 | humidity | 50 | 14400 | < th | dose dependent | rect. | 17 | 19 |
| 456 | 181.55 | temperature | 30 | 30 | < th | dose dependent | rect. | 4 | 22 |
| 461 | 181.57 | humidity | 50 | 14400 | < th | dose independent | rect. | 9 | 8 |
| 546 | 181.68 | humidity | 50 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 560 | 181.71 | humidity | 50 | 14400 | < th | dose independent | rect. | 13 | 23 |
| 580 | 181.73 | humidity | 50 | 14400 | < th | dose independent | no | NA | NA |
| 716 | 181.78 | radiation | 1 | 270 | < th | dose dependent | rect. | 4 | 2 |
| 778 | 181.89 | radiation | 40 | 4320 | < th | dose dependent | rect. | 22 | 7 |
| 797 | 181.93 | radiation | 10 | 90 | < th | dose independent | rect. | 17 | 11 |
| 803 | 181.96 | radiation | 40 | 90 | < th | dose dependent | rect. | 4 | 13 |
| 820 | 182.00 | radiation | 10 | 90 | < th | dose dependent | rect. | 17 | 11 |
| 823 | 182.02 | radiation | 1 | 270 | < th | dose independent | rect. | 5 | 1 |
| 914 | 182.22 | temperature | 10 | 1440 | > th | dose independent | rect. | 19 | 10 |
| 917 | 182.22 | temperature | 30 | 1440 | < th | dose independent | rect. | 19 | 10 |
| 921 | 182.22 | humidity | 50 | 1440 | > th | dose independent | rect. | 19 | 10 |
| 923 | 182.22 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 19 | 10 |
| 924 | 182.22 | radiation | 20 | 1440 | < th | dose independent | rect. | 19 | 10 |
| 936 | 182.22 | temperature | 10 | 1440 | > th | dose independent | rect. | 5 | 14 |
| 946 | 182.26 | radiation | 1 | 1440 | < th | dose independent | rect. | 19 | 10 |
| 948 | 182.26 | humidity | 60 | 14400 | < th | dose dependent | rect. | 11 | 1 |
| 956 | 182.29 | humidity | 50 | 30 | > th | dose dependent | rect. | 4 | 22 |
| 965 | 182.34 | temperature | 10 | 1440 | > th | dose independent | rect. | 5 | 5 |
| 968 | 182.34 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 5 | 5 |
| 969 | 182.34 | atmosphere | 1015 | 1440 | < th | dose independent | rect. | 5 | 5 |
| 970 | 182.34 | temperature | 10 | 1440 | > th | dose independent | rect. | 10 | 19 |
| 999 | 182.39 | temperature | 10 | 90 | > th | dose dependent | rect. | 18 | 10 |