Os01g0105400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Kinesin heavy chain.
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Os01g0105400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Kinesin heavy chain.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 53.38 | 0.343 | 11.1 | -1.15 | 0.689 | -0.666 | -0.551 | 0.597 | 0.023 | 21 | 19.53 | 4386 | -- | -- |
| 53.08 | 0.339 | 11.1 | -1.19 | 0.658 | -0.926 | -0.54 | -- | 0.0324 | 20.9 | 18.9 | 6716 | -- | -- |
| 54.4 | 0.344 | 11.1 | -1.13 | 0.688 | -0.664 | -- | 0.569 | 0.0278 | 21.1 | 19.46 | 4396 | -- | -- |
| 53.74 | 0.341 | 11.1 | -1.16 | 0.667 | -0.925 | -- | -- | 0.0257 | 21.1 | 18.8 | 6466 | -- | -- |
| 79.68 | 0.416 | 11.1 | -1.12 | -- | -0.568 | -- | 0.778 | -0.0195 | -- | 21.82 | 2320 | -- | -- |
| 64.01 | 0.375 | 11.1 | -0.597 | 0.682 | -- | -0.469 | -- | 0.24 | 21.1 | -- | -- | -- | -- |
| 64.76 | 0.377 | 11.1 | -0.581 | 0.682 | -- | -- | -- | 0.24 | 21.1 | -- | -- | -- | -- |
| 79.4 | 0.415 | 11.1 | -1.21 | -- | -0.982 | -- | -- | 0.00623 | -- | 18.9 | 6639 | -- | -- |
| 69.95 | 0.39 | 11.1 | -- | 0.673 | -0.293 | -- | -- | 0.214 | 20.9 | 22.37 | 1288 | -- | -- |
| 91.65 | 0.447 | 11 | -0.579 | -- | -- | -- | -- | 0.236 | -- | -- | -- | -- | -- |
| 73.66 | 0.401 | 11 | -- | 0.683 | -- | -- | -- | 0.304 | 21.1 | -- | -- | -- | -- |
| 88.79 | 0.439 | 11.1 | -- | -- | -0.505 | -- | -- | 0.179 | -- | 25.8 | 692 | -- | -- |
| 100.49 | 0.468 | 11 | -- | -- | -- | -- | -- | 0.3 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 52.04 | temperature | 10 | 270 | > th | dose dependent | rect. | 20 | 15 |
| 4 | 52.42 | humidity | 60 | 43200 | < th | dose independent | rect. | 8 | 2 |
| 5 | 52.44 | humidity | 70 | 43200 | < th | dose dependent | rect. | 8 | 2 |
| 10 | 52.52 | radiation | 30 | 43200 | < th | dose dependent | rect. | 12 | 2 |
| 14 | 52.55 | humidity | 70 | 43200 | < th | dose dependent | rect. | 23 | 11 |
| 18 | 52.58 | radiation | 20 | 43200 | < th | dose independent | rect. | 12 | 2 |
| 23 | 52.60 | humidity | 60 | 43200 | < th | dose dependent | rect. | 2 | 7 |
| 30 | 52.62 | humidity | 60 | 43200 | < th | dose dependent | rect. | 24 | 14 |
| 33 | 52.63 | humidity | 60 | 43200 | < th | dose dependent | rect. | 2 | 12 |
| 39 | 52.64 | humidity | 60 | 43200 | > th | dose independent | rect. | 8 | 2 |
| 49 | 52.66 | humidity | 60 | 43200 | < th | dose dependent | rect. | 7 | 7 |
| 65 | 52.69 | wind | 1 | 43200 | > th | dose independent | rect. | 24 | 1 |
| 73 | 52.70 | radiation | 20 | 43200 | < th | dose independent | rect. | 10 | 4 |
| 79 | 52.72 | humidity | 60 | 43200 | < th | dose independent | rect. | 2 | 8 |
| 80 | 52.72 | humidity | 60 | 43200 | < th | dose dependent | sin | 6 | NA |
| 84 | 52.74 | wind | 1 | 43200 | > th | dose independent | rect. | 23 | 3 |
| 95 | 52.76 | humidity | 60 | 43200 | < th | dose dependent | rect. | 12 | 2 |
| 99 | 52.78 | wind | 9 | 14400 | > th | dose independent | sin | 6 | NA |
| 106 | 52.80 | humidity | 60 | 43200 | > th | dose independent | rect. | 24 | 10 |
| 108 | 52.81 | humidity | 60 | 43200 | > th | dose independent | rect. | 2 | 8 |
| 149 | 52.88 | humidity | 70 | 43200 | > th | dose independent | rect. | 4 | 5 |
| 159 | 52.89 | radiation | 30 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 161 | 52.89 | humidity | 50 | 43200 | > th | dose independent | rect. | 14 | 2 |
| 187 | 52.91 | humidity | 50 | 43200 | > th | dose independent | rect. | 13 | 21 |
| 206 | 52.94 | humidity | 50 | 43200 | > th | dose independent | rect. | 7 | 10 |
| 227 | 52.95 | radiation | 10 | 4320 | > th | dose dependent | rect. | 16 | 16 |
| 228 | 52.96 | wind | 9 | 14400 | < th | dose independent | sin | 6 | NA |
| 236 | 52.96 | radiation | 1 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 264 | 52.99 | temperature | 15 | 30 | > th | dose dependent | rect. | 20 | 19 |
| 294 | 53.02 | humidity | 70 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 311 | 53.03 | humidity | 50 | 43200 | > th | dose independent | sin | 23 | NA |
| 314 | 53.03 | humidity | 50 | 43200 | > th | dose independent | no | NA | NA |
| 332 | 53.03 | humidity | 70 | 43200 | < th | dose independent | rect. | 2 | 19 |
| 367 | 53.04 | wind | 1 | 43200 | > th | dose independent | rect. | 21 | 5 |
| 402 | 53.05 | wind | 9 | 14400 | < th | dose independent | rect. | 22 | 16 |
| 423 | 53.06 | humidity | 70 | 43200 | > th | dose independent | rect. | 17 | 4 |
| 457 | 53.08 | wind | 1 | 43200 | < th | dose independent | rect. | 24 | 1 |
| 480 | 53.09 | humidity | 70 | 43200 | > th | dose independent | rect. | 16 | 6 |
| 481 | 53.09 | humidity | 50 | 43200 | < th | dose independent | rect. | 8 | 9 |
| 485 | 53.09 | humidity | 50 | 43200 | > th | dose independent | rect. | 13 | 16 |
| 506 | 53.10 | humidity | 70 | 43200 | > th | dose independent | rect. | 2 | 19 |
| 513 | 53.10 | humidity | 90 | 14400 | < th | dose dependent | rect. | 3 | 1 |
| 540 | 53.11 | humidity | 70 | 43200 | > th | dose independent | rect. | 4 | 18 |
| 554 | 53.12 | temperature | 20 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 561 | 53.12 | humidity | 50 | 43200 | > th | dose independent | rect. | 13 | 10 |
| 595 | 53.12 | wind | 9 | 14400 | > th | dose dependent | sin | 6 | NA |
| 599 | 53.13 | humidity | 50 | 43200 | > th | dose independent | sin | 10 | NA |
| 600 | 53.13 | humidity | 70 | 43200 | < th | dose independent | sin | 19 | NA |
| 603 | 53.13 | humidity | 50 | 43200 | < th | dose independent | rect. | 13 | 4 |
| 614 | 53.13 | wind | 9 | 14400 | > th | dose independent | rect. | 22 | 16 |
| 635 | 53.14 | radiation | 30 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 690 | 53.15 | humidity | 70 | 43200 | < th | dose independent | sin | 2 | NA |
| 694 | 53.15 | humidity | 70 | 43200 | < th | dose independent | rect. | 16 | 6 |
| 706 | 53.15 | temperature | 20 | 4320 | < th | dose independent | rect. | 14 | 15 |
| 740 | 53.16 | radiation | 30 | 43200 | > th | dose independent | rect. | 9 | 5 |
| 751 | 53.16 | wind | 9 | 14400 | > th | dose independent | rect. | 23 | 14 |
| 764 | 53.16 | wind | 9 | 14400 | > th | dose dependent | rect. | 19 | 20 |
| 765 | 53.17 | humidity | 50 | 43200 | < th | dose independent | sin | 0 | NA |
| 768 | 53.17 | wind | 1 | 43200 | < th | dose independent | rect. | 23 | 3 |
| 771 | 53.17 | humidity | 70 | 43200 | < th | dose independent | rect. | 17 | 4 |
| 846 | 53.19 | humidity | 50 | 43200 | < th | dose independent | rect. | 13 | 23 |
| 936 | 53.21 | radiation | 10 | 43200 | < th | dose independent | rect. | 17 | 3 |
| 983 | 53.21 | temperature | 10 | 270 | > th | dose dependent | rect. | 7 | 17 |