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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0104900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Transferase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.64 (0.0389) R2 : 0.11
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.722 (0.096) R2dC : 0.111 R2C : 0.11
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.00234 (0.0818) R2dN8 : 2.06e-06 R2N8 : -0.000686
σ : 0.733
deviance : 245.78
__
_____
C
peak time of C : 9.37
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
218.02 0.694 4.66 0.524 0.713 0.6 0.871 1.67 -0.0142 9.87 1001 4600 -- --
219.41 0.69 4.65 0.6 0.727 0.777 0.897 -- -0.0215 9.85 999.7 5450 -- --
220.58 0.692 4.66 0.551 0.719 0.608 -- 1.68 -0.0146 9.45 1001 4618 -- --
221.88 0.694 4.64 0.631 0.725 0.784 -- -- -0.0223 9.45 999.6 5353 -- --
251.02 0.738 4.68 0.544 -- 0.626 -- 1.89 -0.0119 -- 1001 4623 -- --
236.77 0.721 4.63 0.459 0.715 -- 0.894 -- 0.0527 9.88 -- -- -- --
239.46 0.725 4.63 0.49 0.723 -- -- -- 0.0522 9.42 -- -- -- --
252.8 0.741 4.66 0.631 -- 0.789 -- -- -0.0205 -- 999.7 5233 -- --
232.11 0.71 4.66 -- 0.726 0.681 -- -- -0.0808 9.39 999.7 5450 -- --
270.07 0.768 4.65 0.485 -- -- -- -- 0.0546 -- -- -- -- --
245.78 0.733 4.64 -- 0.722 -- -- -- -0.00234 9.37 -- -- -- --
262.87 0.755 4.68 -- -- 0.667 -- -- -0.0802 -- 1000 5460 -- --
276.29 0.776 4.66 -- -- -- -- -- 0.000772 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 210.87 wind 1 43200 > th dose independent rect. 4 2
2 213.72 temperature 15 270 > th dose dependent rect. 16 16
3 213.95 temperature 10 90 > th dose dependent sin 11 NA
17 214.93 temperature 30 90 < th dose dependent rect. 12 19
25 215.27 temperature 20 270 > th dose independent rect. 15 18
26 215.27 temperature 20 90 > th dose independent rect. 17 18
27 215.28 temperature 30 14400 < th dose independent rect. 11 2
34 215.48 temperature 25 14400 > th dose dependent rect. 24 1
37 215.61 temperature 30 14400 > th dose independent rect. 11 2
48 215.77 temperature 30 270 < th dose dependent rect. 17 12
60 216.01 wind 5 4320 > th dose dependent rect. 14 11
74 216.19 temperature 20 10 > th dose dependent rect. 18 17
75 216.20 wind 1 43200 < th dose independent rect. 4 2
86 216.35 temperature 30 90 < th dose dependent rect. 19 12
95 216.39 temperature 30 14400 < th dose independent rect. 24 13
99 216.40 temperature 30 14400 < th dose independent rect. 20 17
121 216.54 temperature 25 14400 > th dose dependent rect. 23 10
158 216.68 temperature 30 14400 > th dose dependent rect. 11 2
163 216.71 atmosphere 1000 4320 < th dose independent rect. 15 1
179 216.74 atmosphere 1000 4320 > th dose independent rect. 15 1
192 216.81 wind 9 4320 < th dose independent rect. 15 10
202 216.86 temperature 25 14400 > th dose dependent rect. 6 3
211 216.90 temperature 20 10 > th dose independent rect. 16 20
232 216.99 temperature 25 14400 < th dose independent rect. 1 7
250 217.08 temperature 25 14400 > th dose independent rect. 24 8
256 217.11 wind 9 4320 < th dose independent rect. 15 6
261 217.14 temperature 20 90 > th dose independent sin 10 NA
271 217.16 temperature 30 720 < th dose independent rect. 12 8
282 217.22 atmosphere 1005 14400 > th dose independent rect. 23 2
297 217.25 wind 7 4320 > th dose independent rect. 14 11
304 217.27 temperature 30 90 < th dose dependent sin 11 NA
306 217.28 atmosphere 1000 4320 > th dose independent rect. 6 12
313 217.29 temperature 30 90 < th dose dependent rect. 12 21
323 217.31 atmosphere 1000 4320 < th dose independent rect. 6 12
353 217.37 temperature 30 10 < th dose dependent rect. 19 12
374 217.42 temperature 30 14400 < th dose independent sin 7 NA
375 217.42 temperature 25 14400 < th dose independent rect. 3 1
383 217.43 wind 7 4320 > th dose independent rect. 14 8
392 217.44 temperature 20 10 > th dose independent rect. 18 18
431 217.52 temperature 30 14400 > th dose independent sin 7 NA
449 217.57 atmosphere 1005 14400 < th dose independent rect. 24 1
488 217.63 atmosphere 1000 4320 > th dose independent sin 0 NA
527 217.65 wind 9 4320 > th dose independent rect. 15 6
552 217.67 atmosphere 1000 4320 < th dose independent sin 0 NA
619 217.73 temperature 25 43200 > th dose independent rect. 2 1
723 217.89 temperature 25 14400 > th dose independent rect. 5 3
734 217.90 temperature 20 10 > th dose dependent rect. 18 14
740 217.91 humidity 50 270 > th dose independent rect. 9 22
787 217.95 atmosphere 1000 4320 < th dose dependent rect. 11 1
797 217.97 temperature 25 14400 > th dose independent rect. 6 1
799 217.97 temperature 25 14400 < th dose independent rect. 5 3
806 217.97 atmosphere 1000 4320 < th dose dependent rect. 10 6
839 218.01 atmosphere 1000 4320 < th dose dependent rect. 6 10
842 218.02 atmosphere 1000 4320 < th dose independent rect. 6 1
859 218.03 atmosphere 1000 4320 > th dose independent rect. 7 1
923 218.07 temperature 30 14400 > th dose dependent sin 7 NA
984 218.13 atmosphere 1000 4320 > th dose independent no NA NA