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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0104200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : No apical meristem (NAM) protein domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.06 (0.0381) R2 : 0.432
β1 : 1.26 (0.141) R2dD : 0.11 R2D : 0.102
β2 : -- (--) R2dC : -- R2C : --
β3 : -1.15 (0.122) R2dE : 0.152 R2E : 0.267
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.581 (0.0897) R2dN8 : 0.0887 R2N8 : 0.123
σ : 0.688
deviance : 218.26
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C
peak time of C : --
E
wheather : temperature
threshold : 24.7
memory length : 1329
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
200.55 0.665 4.1 0.942 0.466 -1.21 1.24 1.12 0.479 0.427 24.9 1467 -- --
201.44 0.661 4.07 1.3 0.449 -1.16 1.19 -- 0.543 0.124 24.7 1445 -- --
207.1 0.67 4.1 0.953 0.453 -1.19 -- 0.933 0.489 0.15 24.9 1443 -- --
207.27 0.671 4.07 1.23 0.441 -1.13 -- -- 0.569 0.103 24.7 1426 -- --
217.62 0.687 4.09 0.995 -- -1.23 -- 0.734 0.478 -- 24.8 1331 -- --
239.85 0.726 3.98 1.66 0.523 -- 1.22 -- 0.973 0.73 -- -- -- --
246.19 0.735 3.98 1.61 0.52 -- -- -- 0.967 0.699 -- -- -- --
218.26 0.688 4.06 1.26 -- -1.15 -- -- 0.581 -- 24.7 1329 -- --
242.77 0.726 4.15 -- 0.38 -1.2 -- -- 0.358 24 23.91 2158 -- --
263.11 0.758 3.97 1.63 -- -- -- -- 0.976 -- -- -- -- --
314.73 0.83 4.02 -- 0.545 -- -- -- 0.787 0.838 -- -- -- --
246.92 0.732 4.11 -- -- -1.37 -- -- 0.389 -- 24.1 2271 -- --
333.3 0.852 4.01 -- -- -- -- -- 0.795 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 198.98 temperature 25 1440 < th dose independent rect. 21 19
8 199.67 temperature 25 1440 < th dose independent rect. 12 21
22 200.23 temperature 25 1440 > th dose independent rect. 21 19
70 201.16 temperature 25 1440 > th dose independent rect. 12 21
77 201.28 temperature 25 1440 < th dose independent rect. 4 23
86 201.38 temperature 25 1440 < th dose independent no NA NA
91 201.45 temperature 25 1440 < th dose independent rect. 6 23
95 201.53 temperature 25 1440 < th dose independent sin 14 NA
146 201.99 temperature 25 1440 < th dose independent sin 6 NA
160 202.15 temperature 25 1440 > th dose independent rect. 12 14
164 202.17 temperature 20 1440 > th dose dependent rect. 4 1
198 202.45 temperature 25 1440 > th dose independent rect. 4 22
219 202.69 temperature 30 1440 < th dose dependent rect. 21 2
224 202.71 temperature 15 1440 > th dose dependent rect. 21 2
225 202.72 temperature 25 1440 > th dose independent no NA NA
232 202.74 temperature 20 1440 > th dose dependent rect. 21 9
236 202.77 temperature 20 1440 > th dose dependent rect. 19 11
248 202.83 temperature 25 1440 > th dose independent rect. 6 23
284 203.06 temperature 25 1440 > th dose independent sin 14 NA
326 203.27 temperature 20 1440 > th dose dependent rect. 21 4
354 203.40 temperature 20 1440 > th dose dependent rect. 24 7
356 203.42 temperature 25 1440 > th dose independent sin 6 NA
369 203.46 temperature 25 1440 < th dose dependent rect. 16 9
386 203.54 temperature 30 1440 < th dose dependent rect. 19 6
441 203.77 temperature 20 1440 > th dose dependent sin 12 NA
467 203.84 temperature 25 1440 < th dose dependent sin 16 NA
534 204.04 temperature 25 1440 < th dose dependent rect. 12 17
611 204.26 temperature 20 1440 > th dose dependent rect. 24 1
619 204.29 temperature 20 4320 > th dose independent rect. 21 2
940 205.22 temperature 20 4320 < th dose independent rect. 21 2
941 205.22 temperature 25 1440 < th dose independent rect. 20 5
949 205.23 temperature 25 1440 < th dose independent rect. 19 7
953 205.24 humidity 60 43200 < th dose independent rect. 11 1
963 205.27 temperature 30 4320 < th dose independent rect. 10 6