Os01g0104000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : C-type lectin domain containing protein.
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Os01g0104000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : C-type lectin domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 23.63 | 0.228 | 10.8 | 0.217 | 0.418 | 0.88 | -0.109 | -0.592 | 0.0917 | 6.19 | 7.842 | 380 | -- | -- |
| 23.83 | 0.227 | 10.8 | 0.308 | 0.423 | 0.873 | 0.0269 | -- | 0.117 | 6.18 | 10.08 | 380 | -- | -- |
| 23.64 | 0.226 | 10.8 | 0.227 | 0.418 | 0.878 | -- | -0.508 | 0.0949 | 6.33 | 7.257 | 407 | -- | -- |
| 23.82 | 0.227 | 10.8 | 0.309 | 0.42 | 0.866 | -- | -- | 0.117 | 6.33 | 9.299 | 408 | -- | -- |
| 26.46 | 0.24 | 10.8 | 0.175 | -- | 0.643 | -- | -0.543 | 0.0935 | -- | 14.8 | 1408 | -- | -- |
| 32.05 | 0.265 | 10.8 | 0.502 | 0.182 | -- | -0.146 | -- | 0.243 | 6.88 | -- | -- | -- | -- |
| 32.11 | 0.265 | 10.8 | 0.499 | 0.182 | -- | -- | -- | 0.244 | 6.92 | -- | -- | -- | -- |
| 26.75 | 0.241 | 10.8 | 0.298 | -- | 0.642 | -- | -- | 0.128 | -- | 13.2 | 1421 | -- | -- |
| 26.09 | 0.238 | 10.8 | -- | 0.446 | 0.992 | -- | -- | 0.0811 | 6.55 | 10.69 | 463 | -- | -- |
| 33.84 | 0.272 | 10.8 | 0.503 | -- | -- | -- | -- | 0.247 | -- | -- | -- | -- | -- |
| 38.68 | 0.291 | 10.8 | -- | 0.188 | -- | -- | -- | 0.188 | 6.76 | -- | -- | -- | -- |
| 28 | 0.246 | 10.8 | -- | -- | 0.724 | -- | -- | 0.0856 | -- | 8.091 | 4352 | -- | -- |
| 40.52 | 0.297 | 10.8 | -- | -- | -- | -- | -- | 0.191 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 23.06 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 21 |
| 16 | 23.38 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 17 |
| 43 | 23.55 | temperature | 30 | 720 | < th | dose dependent | rect. | 16 | 20 |
| 58 | 23.66 | temperature | 20 | 720 | > th | dose dependent | sin | 7 | NA |
| 62 | 23.69 | temperature | 10 | 720 | > th | dose dependent | sin | 8 | NA |
| 106 | 23.81 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 123 | 23.86 | temperature | 10 | 270 | > th | dose dependent | no | NA | NA |
| 126 | 23.86 | temperature | 15 | 270 | > th | dose dependent | rect. | 1 | 23 |
| 127 | 23.87 | temperature | 30 | 720 | < th | dose dependent | sin | 9 | NA |
| 156 | 23.92 | temperature | 15 | 270 | > th | dose dependent | rect. | 3 | 23 |
| 170 | 23.95 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 23 |
| 183 | 23.97 | temperature | 30 | 720 | < th | dose dependent | rect. | 23 | 20 |
| 189 | 23.98 | temperature | 30 | 270 | < th | dose dependent | rect. | 22 | 23 |
| 198 | 23.99 | temperature | 15 | 270 | > th | dose dependent | rect. | 23 | 23 |
| 200 | 24.00 | temperature | 20 | 1440 | > th | dose dependent | rect. | 23 | 3 |
| 205 | 24.01 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 207 | 24.01 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 12 |
| 212 | 24.01 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 21 |
| 215 | 24.01 | temperature | 30 | 270 | < th | dose dependent | rect. | 5 | 23 |
| 257 | 24.07 | temperature | 15 | 30 | > th | dose dependent | rect. | 23 | 23 |
| 259 | 24.08 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 9 |
| 338 | 24.13 | temperature | 15 | 1440 | > th | dose dependent | rect. | 18 | 11 |
| 355 | 24.14 | temperature | 15 | 1440 | > th | dose dependent | rect. | 20 | 9 |
| 364 | 24.15 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 381 | 24.15 | temperature | 25 | 720 | < th | dose dependent | rect. | 19 | 23 |
| 406 | 24.17 | temperature | 30 | 1440 | < th | dose dependent | rect. | 23 | 3 |
| 408 | 24.17 | temperature | 30 | 1440 | < th | dose dependent | rect. | 23 | 6 |
| 500 | 24.21 | temperature | 30 | 1440 | < th | dose dependent | rect. | 23 | 1 |
| 529 | 24.22 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 614 | 24.25 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 4 |
| 634 | 24.25 | temperature | 25 | 720 | < th | dose dependent | rect. | 8 | 23 |
| 661 | 24.27 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 2 |
| 765 | 24.31 | temperature | 15 | 1440 | > th | dose dependent | rect. | 3 | 2 |
| 792 | 24.31 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 23 |
| 904 | 24.36 | temperature | 25 | 4320 | < th | dose independent | rect. | 13 | 16 |