Os01g0103400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os01g0103400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 34.49 | 0.276 | 9.36 | 0.527 | 0.169 | 0.618 | 0.79 | 1.82 | 0.0281 | 19.9 | 21.5 | 6 | -- | -- |
| 36.9 | 0.283 | 9.39 | 0.243 | 0.192 | 0.655 | 0.785 | -- | -0.05 | 18.6 | 21.7 | 6 | -- | -- |
| 35.93 | 0.279 | 9.36 | 0.501 | 0.2 | 0.55 | -- | 1.7 | 0.0362 | 18 | 21.7 | 7 | -- | -- |
| 38.31 | 0.288 | 9.39 | 0.217 | 0.182 | 0.681 | -- | -- | -0.0508 | 18.4 | 21.94 | 18 | -- | -- |
| 37.02 | 0.283 | 9.35 | 0.482 | -- | 0.624 | -- | 1.77 | 0.0263 | -- | 22.48 | 101 | -- | -- |
| 43.99 | 0.311 | 9.37 | 0.351 | 0.389 | -- | 0.797 | -- | 0.0573 | 16.6 | -- | -- | -- | -- |
| 45.57 | 0.316 | 9.37 | 0.357 | 0.394 | -- | -- | -- | 0.0616 | 16.2 | -- | -- | -- | -- |
| 38.73 | 0.29 | 9.39 | 0.198 | -- | 0.761 | -- | -- | -0.0537 | -- | 24.09 | 77 | -- | -- |
| 39.5 | 0.293 | 9.4 | -- | 0.181 | 0.723 | -- | -- | -0.078 | 18.5 | 21.62 | 18 | -- | -- |
| 53.96 | 0.343 | 9.36 | 0.341 | -- | -- | -- | -- | 0.0511 | -- | -- | -- | -- | -- |
| 48.93 | 0.327 | 9.38 | -- | 0.387 | -- | -- | -- | 0.0218 | 16.2 | -- | -- | -- | -- |
| 39.92 | 0.294 | 9.39 | -- | -- | 0.799 | -- | -- | -0.0595 | -- | 24.1 | 63 | -- | -- |
| 57.03 | 0.352 | 9.37 | -- | -- | -- | -- | -- | 0.0132 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 31.94 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 22 |
| 7 | 32.38 | temperature | 10 | 90 | > th | dose dependent | rect. | 5 | 23 |
| 16 | 32.58 | humidity | 80 | 14400 | < th | dose dependent | rect. | 4 | 3 |
| 26 | 32.68 | humidity | 80 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 53 | 32.97 | humidity | 80 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 82 | 33.29 | humidity | 80 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 96 | 33.40 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 16 |
| 115 | 33.52 | temperature | 10 | 10 | > th | dose dependent | sin | 0 | NA |
| 118 | 33.53 | temperature | 10 | 90 | > th | dose dependent | sin | 2 | NA |
| 122 | 33.54 | wind | 9 | 14400 | > th | dose dependent | rect. | 12 | 1 |
| 216 | 33.95 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 21 |
| 239 | 34.07 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 18 |
| 256 | 34.13 | temperature | 20 | 30 | > th | dose dependent | rect. | 19 | 23 |
| 270 | 34.25 | wind | 3 | 14400 | > th | dose independent | rect. | 1 | 2 |
| 288 | 34.33 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 290 | 34.36 | wind | 3 | 14400 | < th | dose independent | rect. | 1 | 2 |
| 295 | 34.37 | temperature | 25 | 270 | > th | dose dependent | sin | 6 | NA |
| 318 | 34.45 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 12 |
| 338 | 34.55 | wind | 9 | 14400 | < th | dose independent | rect. | 5 | 9 |
| 341 | 34.56 | temperature | 20 | 90 | > th | dose dependent | rect. | 6 | 11 |
| 347 | 34.58 | wind | 9 | 14400 | < th | dose independent | rect. | 10 | 4 |
| 354 | 34.59 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 18 |
| 362 | 34.61 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 371 | 34.66 | temperature | 25 | 270 | < th | dose independent | rect. | 24 | 21 |
| 384 | 34.73 | wind | 9 | 14400 | < th | dose independent | rect. | 12 | 2 |
| 385 | 34.73 | temperature | 25 | 10 | > th | dose dependent | rect. | 21 | 21 |
| 390 | 34.75 | wind | 9 | 14400 | > th | dose independent | rect. | 10 | 4 |
| 391 | 34.75 | temperature | 20 | 10 | > th | dose dependent | no | NA | NA |
| 392 | 34.75 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 19 |
| 410 | 34.79 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 453 | 34.86 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 470 | 34.90 | temperature | 30 | 270 | < th | dose independent | rect. | 1 | 14 |
| 476 | 34.91 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 504 | 34.96 | temperature | 25 | 10 | > th | dose dependent | rect. | 1 | 17 |
| 521 | 35.00 | temperature | 25 | 10 | > th | dose dependent | rect. | 3 | 15 |
| 530 | 35.02 | temperature | 20 | 270 | > th | dose dependent | rect. | 19 | 20 |
| 536 | 35.03 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 598 | 35.14 | temperature | 25 | 270 | > th | dose dependent | rect. | 21 | 17 |
| 610 | 35.16 | temperature | 30 | 90 | < th | dose dependent | sin | 1 | NA |
| 618 | 35.17 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 20 |
| 629 | 35.20 | wind | 9 | 14400 | > th | dose dependent | rect. | 10 | 4 |
| 685 | 35.29 | wind | 9 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 757 | 35.43 | wind | 3 | 43200 | < th | dose dependent | rect. | 23 | 4 |
| 762 | 35.44 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 10 |
| 831 | 35.54 | temperature | 20 | 1440 | > th | dose independent | rect. | 14 | 16 |
| 835 | 35.54 | temperature | 20 | 720 | > th | dose dependent | rect. | 6 | 1 |
| 842 | 35.54 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 847 | 35.55 | temperature | 20 | 1440 | > th | dose independent | rect. | 11 | 19 |
| 885 | 35.59 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 10 |
| 898 | 35.59 | temperature | 30 | 10 | < th | dose dependent | rect. | 4 | 19 |
| 926 | 35.63 | wind | 3 | 14400 | < th | dose independent | rect. | 1 | 13 |
| 942 | 35.64 | temperature | 20 | 720 | > th | dose dependent | rect. | 5 | 4 |
| 952 | 35.64 | temperature | 20 | 30 | > th | dose dependent | rect. | 13 | 23 |
| 983 | 35.68 | temperature | 20 | 1440 | < th | dose independent | rect. | 14 | 16 |
| 995 | 35.69 | wind | 3 | 14400 | > th | dose independent | rect. | 1 | 13 |
| 999 | 35.69 | temperature | 20 | 1440 | < th | dose independent | rect. | 10 | 20 |