Os01g0103100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : TGF-beta receptor, type I/II extracellular region family protein.
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Os01g0103100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : TGF-beta receptor, type I/II extracellular region family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 70.62 | 0.395 | 6.91 | 0.408 | 2.56 | 2.19 | -0.322 | -0.191 | 0.0134 | 6.63 | 10.3 | 757 | -- | -- |
| 70.64 | 0.391 | 6.91 | 0.44 | 2.54 | 2.18 | -0.294 | -- | 0.0226 | 6.64 | 11.14 | 770 | -- | -- |
| 70.85 | 0.392 | 6.91 | 0.436 | 2.56 | 2.2 | -- | -0.0121 | 0.0222 | 6.63 | 10.71 | 757 | -- | -- |
| 70.85 | 0.392 | 6.91 | 0.436 | 2.56 | 2.2 | -- | -- | 0.0221 | 6.64 | 10.7 | 757 | -- | -- |
| 295.77 | 0.801 | 6.97 | 0.414 | -- | 2.15 | -- | 0.13 | 0.0243 | -- | 11.39 | 1326 | -- | -- |
| 131.98 | 0.539 | 6.84 | 1.01 | 2.16 | -- | -0.645 | -- | 0.36 | 6.13 | -- | -- | -- | -- |
| 133 | 0.54 | 6.84 | 1 | 2.16 | -- | -- | -- | 0.363 | 6.14 | -- | -- | -- | -- |
| 295.78 | 0.801 | 6.97 | 0.386 | -- | 2.16 | -- | -- | 0.0175 | -- | 11.66 | 1325 | -- | -- |
| 74.86 | 0.403 | 6.93 | -- | 2.28 | 2.24 | -- | -- | -0.0479 | 6.76 | 10.65 | 994 | -- | -- |
| 375.2 | 0.905 | 6.88 | 1.06 | -- | -- | -- | -- | 0.411 | -- | -- | -- | -- | -- |
| 159.36 | 0.591 | 6.87 | -- | 2.18 | -- | -- | -- | 0.251 | 6.12 | -- | -- | -- | -- |
| 299.19 | 0.806 | 6.99 | -- | -- | 2.32 | -- | -- | -0.0493 | -- | 10.2 | 1328 | -- | -- |
| 404.88 | 0.939 | 6.91 | -- | -- | -- | -- | -- | 0.293 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 62.24 | temperature | 10 | 720 | > th | dose dependent | rect. | 18 | 21 |
| 21 | 68.08 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 21 |
| 25 | 68.53 | temperature | 10 | 720 | > th | dose dependent | rect. | 2 | 22 |
| 30 | 68.84 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 19 |
| 75 | 70.68 | temperature | 10 | 720 | > th | dose dependent | no | NA | NA |
| 76 | 70.69 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 23 |
| 107 | 71.09 | temperature | 30 | 720 | < th | dose dependent | rect. | 15 | 20 |
| 160 | 71.24 | temperature | 10 | 1440 | > th | dose dependent | rect. | 21 | 23 |
| 202 | 71.31 | temperature | 30 | 720 | < th | dose dependent | rect. | 6 | 22 |
| 298 | 71.53 | temperature | 30 | 720 | < th | dose dependent | rect. | 22 | 21 |
| 301 | 71.54 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 359 | 71.69 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 5 |
| 373 | 71.73 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 7 |
| 378 | 71.74 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 7 |
| 394 | 71.79 | temperature | 10 | 1440 | > th | dose dependent | sin | 16 | NA |
| 402 | 71.81 | temperature | 10 | 1440 | > th | dose dependent | sin | 4 | NA |
| 425 | 71.87 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 5 |
| 469 | 71.96 | temperature | 10 | 1440 | > th | dose dependent | rect. | 1 | 13 |
| 477 | 71.97 | temperature | 10 | 1440 | > th | dose dependent | rect. | 3 | 11 |
| 482 | 71.99 | temperature | 10 | 1440 | > th | dose dependent | rect. | 18 | 3 |
| 689 | 72.45 | temperature | 30 | 720 | < th | dose dependent | no | NA | NA |
| 786 | 72.70 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 21 |
| 911 | 72.98 | temperature | 10 | 1440 | > th | dose dependent | rect. | 5 | 5 |