FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0103000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, unclassifiable transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.53 (0.0316) R2 : 0.835
β1 : -0.69 (0.116) R2dD : 0.0151 R2D : 0.0106
β2 : -- (--) R2dC : -- R2C : --
β3 : 4.22 (0.089) R2dE : 0.808 R2E : 0.804
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.344 (0.0675) R2dN8 : 0.0121 R2N8 : 0.0185
σ : 0.591
deviance : 161.23
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 1.928
memory length : 253
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 11.2
open length of G : 7.5

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
145.92 0.568 4.55 -0.708 0.635 4.14 0.965 -0.0344 0.346 22.2 2.007 263 10.7 7.52
145.9 0.563 4.54 -0.698 0.634 4.13 0.952 -- 0.349 22.3 1.246 262 10.7 7.51
149.63 0.57 4.55 -0.741 0.626 4.12 -- -0.0122 0.344 22.2 1.537 260 10.7 7.53
149.61 0.57 4.55 -0.74 0.62 4.11 -- -- 0.345 22.1 1.581 260 10.7 7.52
161.58 0.592 4.54 -0.729 -- 4.18 -- 0.0968 0.324 -- 1.225 267 11.1 7.54
329.53 0.851 4.56 -0.437 3.45 -- 0.703 -- 0.518 17.6 -- -- -- --
330.73 0.852 4.56 -0.44 3.46 -- -- -- 0.521 17.6 -- -- -- --
161.23 0.591 4.53 -0.69 -- 4.22 -- -- 0.344 -- 1.928 253 11.2 7.5
163.65 0.596 4.53 -- 0.59 4.01 -- -- 0.426 21.6 0.4332 259 10.8 7.49
951.2 1.44 4.51 -0.552 -- -- -- -- 0.438 -- -- -- -- --
335.83 0.857 4.55 -- 3.46 -- -- -- 0.57 17.6 -- -- -- --
174.61 0.615 4.52 -- -- 4.08 -- -- 0.405 -- -3.709 244 11.2 7.44
959.23 1.45 4.49 -- -- -- -- -- 0.499 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 150.33 temperature 10.0 270 > th dose dependent rect. 11 7
4 159.16 radiation 1.0 270 > th dose independent rect. 11 8
18 163.79 temperature 20.0 270 > th dose independent rect. 11 7
20 164.38 temperature 15.0 270 > th dose independent rect. 18 17
21 164.79 wind 9.0 270 < th dose independent rect. 11 7
22 165.67 atmosphere 995.0 270 > th dose independent rect. 18 17
23 165.76 radiation 20.0 270 < th dose dependent rect. 16 8
30 166.65 temperature 30.0 270 < th dose independent rect. 17 6
31 166.87 precipitation 0.1 270 < th dose independent rect. 11 7
32 166.87 precipitation 0.1 270 < th dose dependent rect. 11 7
33 167.32 temperature 10.0 270 > th dose independent rect. 11 7
34 167.32 atmosphere 1015.0 270 < th dose independent rect. 11 7
36 167.64 temperature 30.0 270 < th dose independent rect. 17 18
38 167.81 wind 9.0 270 < th dose independent rect. 18 17
46 168.83 radiation 1.0 270 < th dose independent rect. 16 7
47 168.91 humidity 50.0 270 > th dose independent rect. 18 17
48 169.12 temperature 20.0 90 > th dose independent rect. 13 6
64 169.66 wind 1.0 270 > th dose independent rect. 11 7
65 169.74 temperature 15.0 270 > th dose independent rect. 17 7
71 170.97 humidity 60.0 270 > th dose independent rect. 17 6
76 171.64 radiation 1.0 270 > th dose independent sin 19 NA
82 172.00 temperature 10.0 270 > th dose dependent rect. 12 17
83 172.07 radiation 40.0 270 < th dose dependent rect. 22 9
86 172.11 temperature 15.0 270 > th dose independent rect. 7 15
101 173.34 radiation 1.0 270 < th dose independent sin 19 NA
104 173.55 humidity 90.0 270 < th dose independent rect. 11 7
105 173.71 precipitation 0.1 270 < th dose independent rect. 22 9
106 173.71 precipitation 0.1 270 < th dose dependent rect. 22 9
107 173.93 wind 9.0 90 < th dose independent rect. 13 6
112 174.14 wind 9.0 270 < th dose independent rect. 22 9
113 174.16 temperature 10.0 270 > th dose independent rect. 22 9
114 174.16 temperature 30.0 270 < th dose independent rect. 22 9
115 174.16 humidity 50.0 270 > th dose independent rect. 22 9
117 174.16 atmosphere 995.0 270 > th dose independent rect. 22 9
118 174.16 radiation 40.0 270 < th dose independent rect. 22 9
123 174.34 precipitation 0.1 270 < th dose independent rect. 12 17
124 174.34 precipitation 0.1 270 < th dose dependent rect. 12 17
128 174.46 precipitation 0.1 90 < th dose independent rect. 13 6
129 174.46 precipitation 0.1 90 < th dose dependent rect. 13 6
134 174.82 wind 1.0 90 > th dose independent rect. 13 6
139 175.01 wind 9.0 270 < th dose independent rect. 12 17
143 175.20 temperature 10.0 90 > th dose independent rect. 13 6
145 175.20 atmosphere 1010.0 90 < th dose independent rect. 13 6
149 175.24 temperature 10.0 270 > th dose dependent rect. 24 17
160 175.76 temperature 15.0 270 > th dose independent rect. 17 19
162 175.90 precipitation 0.1 270 < th dose independent rect. 18 17
163 175.90 precipitation 0.1 270 < th dose dependent rect. 18 17
164 175.96 atmosphere 995.0 270 > th dose independent rect. 17 6
166 176.06 radiation 1.0 270 < th dose dependent sin 19 NA
181 176.76 wind 9.0 270 < th dose independent rect. 24 17
198 177.28 temperature 10.0 270 > th dose independent rect. 5 7
199 177.28 atmosphere 995.0 270 > th dose independent rect. 5 7
200 177.28 atmosphere 1015.0 270 < th dose independent rect. 5 7
201 177.28 temperature 10.0 270 > th dose independent rect. 12 17
202 177.33 precipitation 0.1 270 < th dose independent rect. 5 7
203 177.33 precipitation 0.1 270 < th dose dependent rect. 5 7
204 177.46 temperature 10.0 10 > th dose dependent rect. 13 7
211 177.77 temperature 10.0 270 > th dose dependent rect. 11 19
212 177.84 wind 9.0 270 < th dose independent rect. 5 7
225 178.07 temperature 10.0 270 > th dose independent rect. 24 17
227 178.12 atmosphere 1015.0 270 < th dose independent rect. 24 17
256 178.77 temperature 15.0 90 > th dose independent rect. 19 6
258 178.86 precipitation 0.1 270 < th dose independent rect. 24 17
259 178.86 precipitation 0.1 270 < th dose dependent rect. 24 17
290 179.79 radiation 40.0 90 < th dose independent rect. 12 7
292 179.81 wind 9.0 270 < th dose independent rect. 17 7
311 180.41 temperature 10.0 270 > th dose dependent rect. 23 19
316 180.55 wind 9.0 270 < th dose independent rect. 7 15
440 183.90 atmosphere 1015.0 270 < th dose independent rect. 7 15
448 184.15 humidity 50.0 270 > th dose independent rect. 5 7
463 184.74 wind 1.0 270 > th dose independent rect. 17 7
465 184.79 radiation 1.0 270 < th dose dependent rect. 6 17
477 185.43 humidity 50.0 270 > th dose dependent rect. 22 9
481 185.73 precipitation 0.1 270 < th dose independent rect. 17 6
482 185.73 precipitation 0.1 270 < th dose dependent rect. 17 6
501 186.34 atmosphere 995.0 270 > th dose independent rect. 11 7
504 186.45 wind 9.0 270 < th dose dependent rect. 22 9
505 186.55 precipitation 0.1 270 < th dose independent rect. 7 15
506 186.55 precipitation 0.1 270 < th dose dependent rect. 7 15
508 186.70 atmosphere 995.0 90 > th dose independent rect. 13 6
532 187.14 humidity 50.0 270 > th dose dependent rect. 17 6
546 187.54 temperature 20.0 10 > th dose independent rect. 13 7
551 187.61 humidity 50.0 90 > th dose independent rect. 19 6
553 187.61 atmosphere 995.0 90 > th dose independent rect. 19 6
554 187.61 radiation 1.0 90 < th dose independent rect. 19 6
559 187.61 atmosphere 995.0 270 > th dose independent rect. 24 17
562 187.61 radiation 10.0 90 < th dose dependent rect. 19 6
579 187.90 wind 9.0 90 < th dose independent rect. 19 6
611 188.35 atmosphere 995.0 270 > th dose independent rect. 7 15
656 189.38 temperature 15.0 10 > th dose independent rect. 20 17
657 189.42 wind 1.0 270 > th dose independent rect. 5 7
683 190.12 atmosphere 1015.0 270 < th dose independent rect. 22 9
721 190.67 atmosphere 1015.0 270 < th dose independent rect. 17 6
731 190.93 precipitation 0.1 10 < th dose independent rect. 13 7
732 190.93 precipitation 0.1 10 < th dose dependent rect. 13 7
779 191.56 wind 1.0 90 > th dose independent rect. 19 18
780 191.59 wind 1.0 10 > th dose independent rect. 13 7
794 191.88 radiation 1.0 270 > th dose independent rect. 4 8
809 192.00 atmosphere 1015.0 270 < th dose independent rect. 18 17
830 192.49 atmosphere 1015.0 90 < th dose dependent rect. 13 6
847 193.22 precipitation 0.1 90 < th dose independent rect. 19 6
848 193.22 precipitation 0.1 90 < th dose dependent rect. 19 6
868 193.68 wind 9.0 10 < th dose independent rect. 13 7
901 194.59 temperature 10.0 10 > th dose independent rect. 13 7
903 194.59 atmosphere 1010.0 10 < th dose independent rect. 13 7
906 194.59 atmosphere 995.0 10 > th dose independent rect. 20 17
936 195.05 temperature 10.0 1440 > th dose independent rect. 14 6
939 195.05 temperature 10.0 1440 > th dose independent rect. 20 18
942 195.05 atmosphere 995.0 1440 > th dose independent rect. 20 18
967 195.70 wind 9.0 10 < th dose independent rect. 20 17