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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0102500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.42 (0.0278) R2 : 0.75
β1 : 1.29 (0.104) R2dD : 0.0944 R2D : 0.0147
β2 : 1.87 (0.0703) R2dC : 0.39 R2C : 0.368
β3 : 3.07 (0.129) R2dE : 0.371 R2E : 0.263
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0299 (0.0623) R2dN8 : 0.000195 R2N8 : -0.00796
σ : 0.511
deviance : 120.15
__
_____
C
peak time of C : 7.45
E
wheather : temperature
threshold : 24.38
memory length : 61
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
118.4 0.511 5.38 1.45 1.79 2.95 0.34 -1.1 0.135 7.59 25.14 77 -- --
120.03 0.51 5.4 1.3 1.83 3.08 0.394 -- 0.08 7.49 24.63 74 -- --
118.47 0.507 5.39 1.45 1.82 2.93 -- -1.15 0.126 7.56 25.06 61 -- --
120.15 0.511 5.42 1.29 1.87 3.07 -- -- 0.0299 7.45 24.38 61 -- --
205.14 0.667 5.39 1.91 -- 4.03 -- -2.93 0.22 -- 54.45 395 -- --
253.65 0.747 5.54 0.568 1.93 -- -0.264 -- -0.505 6.41 -- -- -- --
253.81 0.746 5.54 0.566 1.93 -- -- -- -0.504 6.44 -- -- -- --
206.11 0.669 5.45 1.43 -- 3.63 -- -- 0.195 -- 30.43 405 -- --
159.81 0.592 5.47 -- 1.93 2.53 -- -- -0.191 7.3 24.38 61 -- --
448.03 0.989 5.58 0.615 -- -- -- -- -0.464 -- -- -- -- --
262.24 0.758 5.56 -- 1.94 -- -- -- -0.567 6.42 -- -- -- --
260.44 0.752 5.48 -- -- 3.3 -- -- -0.0314 -- 30.86 391 -- --
458 0.999 5.59 -- -- -- -- -- -0.532 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 111.32 temperature 25 90 < th dose dependent rect. 11 22
3 114.30 temperature 25 90 < th dose dependent rect. 13 22
6 115.12 temperature 25 90 < th dose dependent rect. 15 20
11 115.88 temperature 25 10 < th dose dependent rect. 5 23
16 117.23 temperature 25 10 < th dose dependent rect. 13 23
25 118.24 temperature 25 10 < th dose dependent rect. 3 23
31 118.64 temperature 30 720 < th dose dependent rect. 9 15
32 118.76 temperature 25 90 < th dose dependent rect. 15 23
33 118.79 temperature 25 90 < th dose dependent no NA NA
43 118.98 temperature 25 30 < th dose dependent rect. 17 23
47 119.12 temperature 25 30 < th dose dependent rect. 23 23
55 119.19 temperature 25 30 < th dose dependent rect. 21 23
56 119.27 temperature 25 30 < th dose dependent rect. 19 23
59 119.48 temperature 25 30 < th dose dependent rect. 7 23
64 119.66 temperature 25 30 < th dose dependent rect. 1 23
93 121.46 temperature 30 720 < th dose dependent sin 18 NA
135 123.32 temperature 10 720 > th dose dependent rect. 9 17
182 125.94 temperature 10 720 > th dose dependent sin 17 NA
201 126.69 temperature 15 720 > th dose dependent rect. 15 10
234 127.60 temperature 10 720 > th dose dependent rect. 15 8
235 127.61 temperature 30 720 < th dose dependent rect. 13 10
291 128.99 temperature 10 720 > th dose dependent rect. 14 13
334 129.58 temperature 10 270 > th dose dependent sin 12 NA
369 130.22 temperature 30 270 < th dose dependent sin 12 NA
396 130.87 temperature 25 10 < th dose dependent rect. 5 21
594 134.16 temperature 10 270 > th dose dependent rect. 6 23
789 137.34 temperature 10 90 > th dose dependent no NA NA
791 137.36 temperature 25 720 < th dose independent rect. 9 15