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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0102000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Phosphoesterase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.13 (0.03) R2 : 0.234
β1 : -0.653 (0.122) R2dD : 0.0529 R2D : -0.085
β2 : -- (--) R2dC : -- R2C : --
β3 : 3.67 (0.321) R2dE : 0.7 R2E : -0.45
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -30.9 (2.78) R2dD*E : 0.735 R2D*E : -0.492
γ1 : 0.036 (0.0629) R2dN8 : 0.000271 R2N8 : -0.0135
σ : 0.553
deviance : 139.23
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_____
C
peak time of C : --
E
wheather : temperature
threshold : 24.47
memory length : 11
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 5.32
open length of G : 0.887

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
147.1 0.57 3.12 -0.457 0.158 6.37 -0.281 -51.9 0.0257 6.61 25 10 5.02 0.995
175.34 0.621 3.06 0.0498 0.152 0.787 -0.495 -- 0.0228 6.8 25 10 5.02 0.995
138.33 0.552 3.1 -0.385 0.156 3.56 -- -31.1 0.028 5.97 25 10 5.02 0.996
175.13 0.616 3.06 0.0366 0.147 0.921 -- -- 0.0285 6.33 24.9 10 5.24 1.33
139.23 0.553 3.13 -0.653 -- 3.67 -- -30.9 0.036 -- 24.47 11 5.32 0.887
179.41 0.628 3.06 0.0582 0.206 -- -0.385 -- 0.00754 6.43 -- -- -- --
179.74 0.628 3.06 0.0522 0.206 -- -- -- 0.00832 5.94 -- -- -- --
172.19 0.611 3.07 0.0396 -- 3.15 -- -- -0.00106 -- 24.5 82 5.1 0.45
173.55 0.614 3.05 -- 0.111 1.21 -- -- 0.0238 6.02 24.79 22 5.27 1.36
181.94 0.63 3.07 0.0583 -- -- -- -- 0.0131 -- -- -- -- --
179.81 0.627 3.07 -- 0.207 -- -- -- 0.00251 5.92 -- -- -- --
159.71 0.589 3.06 -- -- 3.34 -- -- 0.0291 -- 24.22 81 5.04 0.383
182.03 0.63 3.07 -- -- -- -- -- 0.0066 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 152.89 temperature 25 10 > th dose independent rect. 5 1
2 161.62 atmosphere 1000 90 < th dose dependent rect. 15 5
4 162.01 atmosphere 1000 10 < th dose independent rect. 15 6
8 162.09 atmosphere 1000 10 < th dose dependent rect. 16 5
57 165.44 atmosphere 1000 90 < th dose dependent rect. 14 1
74 165.54 atmosphere 1000 90 < th dose independent rect. 14 1
75 165.54 atmosphere 1000 10 < th dose independent rect. 15 1
116 167.81 wind 1 90 < th dose dependent rect. 9 1
119 168.14 atmosphere 1000 90 < th dose independent rect. 18 1
123 168.14 atmosphere 1000 90 < th dose dependent rect. 18 1
131 168.26 wind 1 10 < th dose independent rect. 8 2
153 168.71 atmosphere 1005 90 < th dose dependent rect. 5 1
156 168.92 wind 1 10 < th dose dependent rect. 8 2
167 169.29 atmosphere 1010 10 > th dose independent rect. 24 10
178 169.42 atmosphere 1010 90 > th dose independent rect. 24 9
186 169.54 atmosphere 1010 90 > th dose independent rect. 8 1
187 169.54 atmosphere 1010 10 > th dose independent rect. 9 1
253 169.97 humidity 70 90 < th dose independent rect. 18 1
266 170.23 wind 1 90 < th dose independent rect. 14 1
281 170.42 wind 1 90 < th dose independent rect. 9 1
289 170.50 humidity 90 10 < th dose independent rect. 5 1
301 170.59 wind 1 10 < th dose dependent rect. 8 16
310 170.72 atmosphere 1000 90 < th dose dependent sin 18 NA
326 171.04 humidity 60 1440 > th dose independent rect. 22 11
350 171.27 humidity 60 1440 > th dose independent rect. 7 2
372 171.45 humidity 60 270 < th dose independent rect. 8 1
398 171.45 humidity 60 270 < th dose dependent rect. 8 1
426 171.47 humidity 60 90 < th dose dependent rect. 17 17
427 171.48 humidity 60 90 < th dose independent rect. 18 15
428 171.48 humidity 60 90 < th dose dependent rect. 18 15
429 171.51 humidity 60 30 < th dose independent rect. 16 18
442 171.56 humidity 60 10 < th dose dependent rect. 17 17
463 171.60 humidity 60 10 < th dose independent rect. 10 1
466 171.60 humidity 60 10 < th dose dependent rect. 10 1
629 171.69 humidity 60 4320 < th dose independent rect. 8 1
643 171.71 temperature 20 30 > th dose dependent rect. 5 1
650 171.75 wind 1 720 < th dose dependent rect. 4 1
698 171.83 humidity 60 4320 < th dose dependent rect. 8 1
782 171.98 humidity 60 1440 > th dose independent rect. 3 6
796 172.07 wind 1 10 < th dose dependent rect. 9 13
798 172.10 wind 1 90 < th dose dependent rect. 14 1
800 172.11 humidity 60 90 > th dose independent rect. 21 13
822 172.21 wind 3 10 < th dose dependent rect. 16 1
867 172.40 radiation 40 30 > th dose independent rect. 9 1
912 172.55 atmosphere 1000 90 > th dose independent rect. 11 10
924 172.58 wind 1 10 < th dose independent rect. 8 16
983 172.75 humidity 70 90 < th dose dependent rect. 18 1
993 172.80 wind 1 10 < th dose independent rect. 9 13