Os01g0101800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0101800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 267.22 | 0.768 | 5.88 | -0.961 | 3.59 | -3.62 | 0.483 | -0.306 | -0.0881 | 6.94 | 10.56 | 93 | 7.07 | 20.1 |
| 267.15 | 0.761 | 5.87 | -0.928 | 3.63 | -3.61 | 0.584 | -- | -0.0727 | 6.94 | 11.16 | 87 | 7.13 | 20.1 |
| 267.64 | 0.762 | 5.88 | -0.96 | 3.61 | -3.61 | -- | -0.477 | -0.0891 | 6.92 | 10.79 | 94 | 7.07 | 20.1 |
| 267.99 | 0.762 | 5.87 | -0.911 | 3.62 | -3.64 | -- | -- | -0.071 | 6.95 | 11.19 | 87 | 7.14 | 20.1 |
| 315.58 | 0.827 | 5.97 | -1.01 | -- | -6.46 | -- | -1.37 | -0.143 | -- | -14.25 | 470 | 5.55 | 17.3 |
| 452.78 | 0.998 | 5.9 | -1.45 | 5.54 | -- | 1.46 | -- | -0.318 | 6.11 | -- | -- | -- | -- |
| 458.05 | 1 | 5.9 | -1.43 | 5.54 | -- | -- | -- | -0.323 | 6.12 | -- | -- | -- | -- |
| 311.65 | 0.822 | 5.98 | -0.892 | -- | -6.73 | -- | -- | -0.121 | -- | -7.729 | 467 | 5.85 | 16.9 |
| 287.18 | 0.789 | 5.84 | -- | 3.62 | -3.75 | -- | -- | 0.0749 | 7.1 | 13.25 | 59 | 7.42 | 20 |
| 2050.69 | 2.12 | 6 | -1.27 | -- | -- | -- | -- | -0.199 | -- | -- | -- | -- | -- |
| 512.04 | 1.06 | 5.86 | -- | 5.52 | -- | -- | -- | -0.164 | 6.13 | -- | -- | -- | -- |
| 331.98 | 0.849 | 5.95 | -- | -- | -6.91 | -- | -- | 0.0139 | -- | -2.391 | 448 | 5.9 | 17.2 |
| 2093.53 | 2.14 | 5.96 | -- | -- | -- | -- | -- | -0.058 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 269.46 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 7 | 20 |
| 3 | 277.05 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 7 | 21 |
| 36 | 302.02 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 21 | 14 |
| 68 | 313.70 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 3 | 14 |
| 73 | 314.34 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 3 | 16 |
| 77 | 314.98 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 22 | 16 |
| 80 | 315.85 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 3 | 18 |
| 83 | 316.57 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 3 | 12 |
| 97 | 318.85 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 22 | 16 |
| 112 | 321.22 | temperature | 20.0 | 90 | > th | dose dependent | sin | 6 | NA |
| 150 | 324.43 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 3 | 20 |
| 158 | 324.90 | temperature | 20.0 | 270 | > th | dose independent | rect. | 6 | 20 |
| 176 | 326.39 | temperature | 30.0 | 90 | < th | dose dependent | sin | 5 | NA |
| 237 | 330.58 | temperature | 25.0 | 270 | > th | dose independent | rect. | 20 | 17 |
| 358 | 337.52 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 412 | 340.01 | temperature | 25.0 | 270 | > th | dose independent | sin | 8 | NA |
| 426 | 340.41 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 1 | 22 |
| 430 | 340.49 | wind | 1.0 | 270 | > th | dose independent | rect. | 3 | 2 |
| 432 | 340.55 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 3 | 10 |
| 436 | 340.85 | radiation | 1.0 | 270 | < th | dose independent | rect. | 3 | 11 |
| 445 | 341.15 | radiation | 30.0 | 90 | < th | dose dependent | rect. | 3 | 10 |
| 450 | 341.26 | humidity | 60.0 | 90 | > th | dose dependent | rect. | 3 | 12 |
| 454 | 341.51 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 7 | 9 |
| 464 | 341.82 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 21 | 6 |
| 467 | 341.88 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 7 | 7 |
| 471 | 341.93 | humidity | 60.0 | 90 | > th | dose dependent | rect. | 3 | 10 |
| 527 | 343.36 | radiation | 1.0 | 270 | < th | dose independent | rect. | 3 | 14 |
| 533 | 343.54 | humidity | 60.0 | 90 | > th | dose dependent | rect. | 3 | 14 |
| 554 | 344.07 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 6 | 8 |
| 558 | 344.23 | humidity | 60.0 | 90 | > th | dose dependent | rect. | 3 | 16 |
| 569 | 344.63 | radiation | 1.0 | 270 | < th | dose independent | sin | 2 | NA |
| 571 | 344.72 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 3 | 6 |
| 574 | 344.78 | temperature | 20.0 | 90 | > th | dose independent | rect. | 21 | 6 |
| 576 | 344.87 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 3 | 14 |
| 582 | 345.05 | humidity | 60.0 | 90 | > th | dose dependent | rect. | 3 | 18 |
| 590 | 345.30 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 636 | 346.25 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 21 | 4 |
| 652 | 346.59 | radiation | 30.0 | 90 | < th | dose dependent | rect. | 3 | 6 |
| 663 | 346.95 | radiation | 1.0 | 270 | > th | dose independent | sin | 2 | NA |
| 668 | 347.08 | humidity | 60.0 | 10 | > th | dose dependent | rect. | 4 | 17 |
| 698 | 347.88 | radiation | 1.0 | 270 | < th | dose dependent | sin | 2 | NA |
| 704 | 347.97 | radiation | 30.0 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 711 | 348.17 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 727 | 348.57 | wind | 9.0 | 90 | < th | dose dependent | rect. | 7 | 20 |
| 748 | 348.99 | temperature | 20.0 | 270 | > th | dose independent | rect. | 21 | 4 |
| 761 | 349.30 | temperature | 25.0 | 270 | < th | dose independent | sin | 8 | NA |
| 795 | 350.17 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 21 | 7 |
| 798 | 350.24 | wind | 9.0 | 270 | < th | dose independent | rect. | 5 | 22 |
| 817 | 350.52 | temperature | 20.0 | 10 | > th | dose independent | rect. | 22 | 6 |
| 818 | 350.52 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 22 | 2 |
| 842 | 350.97 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 5 | 22 |
| 844 | 350.97 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 5 | 22 |
| 864 | 351.36 | temperature | 25.0 | 270 | < th | dose independent | rect. | 23 | 22 |
| 894 | 352.00 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 11 | 22 |
| 896 | 352.07 | wind | 1.0 | 270 | > th | dose independent | rect. | 2 | 4 |
| 902 | 352.15 | temperature | 25.0 | 270 | < th | dose independent | rect. | 1 | 20 |
| 904 | 352.18 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 3 | 2 |
| 916 | 352.30 | temperature | 25.0 | 90 | < th | dose independent | rect. | 3 | 18 |
| 933 | 352.63 | temperature | 25.0 | 90 | < th | dose independent | rect. | 3 | 20 |
| 976 | 353.45 | wind | 7.0 | 90 | < th | dose independent | rect. | 7 | 20 |
| 987 | 353.67 | humidity | 60.0 | 10 | > th | dose dependent | rect. | 4 | 13 |