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Os01g0101600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : RNA-binding region RNP-1 (RNA recognition motif) domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.5 (0.0183) R2 : 0.00387
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0512 (0.0385) R2dN8 : 0.005 R2N8 : 0.00387
σ : 0.344
deviance : 54.3
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
27 0.244 10.4 1.25 0.239 -0.521 -0.154 2.04 0.214 11 7.184 908 -- --
29.77 0.254 10.4 0.971 0.319 -0.474 -0.492 -- 0.159 10.9 9.651 7461 -- --
27.08 0.242 10.4 1.27 0.242 -0.518 -- 2.18 0.22 10.8 7.143 913 -- --
30.75 0.258 10.4 0.949 0.324 -0.469 -- -- 0.155 10.6 2.738 7418 -- --
30.07 0.255 10.4 1.31 -- -0.69 -- 2.12 0.247 -- 15.68 847 -- --
33.5 0.271 10.4 0.73 0.328 -- -0.471 -- 0.0308 10.9 -- -- -- --
34.42 0.275 10.4 0.711 0.332 -- -- -- 0.0288 10.7 -- -- -- --
33.9 0.271 10.4 0.885 -- -0.678 -- -- 0.133 -- 13.04 828 -- --
41.42 0.3 10.5 -- 0.337 0.405 -- -- -0.171 10.7 -42.56 47520 -- --
41.22 0.3 10.5 0.704 -- -- -- -- 0.0269 -- -- -- -- --
47.73 0.323 10.5 -- 0.327 -- -- -- -0.0503 10.6 -- -- -- --
48.43 0.324 10.5 -- -- 0.39 -- -- -0.168 -- -32.22 47520 -- --
54.3 0.344 10.5 -- -- -- -- -- -0.0512 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 26.45 radiation 1 14400 < th dose independent rect. 18 11
2 26.50 radiation 1 14400 < th dose independent rect. 18 8
3 26.50 humidity 90 14400 > th dose dependent rect. 19 9
4 26.51 radiation 1 14400 < th dose independent rect. 18 2
15 26.54 temperature 10 1440 > th dose dependent rect. 18 1
18 26.56 temperature 10 720 > th dose dependent rect. 16 21
20 26.58 humidity 90 14400 > th dose dependent rect. 21 6
22 26.59 temperature 30 1440 < th dose dependent rect. 18 1
49 26.71 temperature 10 720 > th dose dependent rect. 16 19
50 26.72 humidity 90 14400 > th dose dependent sin 11 NA
52 26.72 temperature 10 720 > th dose dependent rect. 14 23
54 26.73 temperature 30 1440 < th dose dependent rect. 17 4
55 26.73 temperature 30 270 < th dose dependent rect. 2 21
73 26.78 temperature 10 720 > th dose dependent rect. 16 23
74 26.79 humidity 90 14400 > th dose independent rect. 19 10
115 26.85 temperature 10 720 > th dose dependent rect. 14 21
126 26.87 humidity 90 43200 < th dose independent rect. 5 4
162 26.91 radiation 1 14400 > th dose independent rect. 18 1
174 26.91 temperature 10 720 > th dose dependent rect. 1 17
202 26.94 temperature 10 720 > th dose dependent rect. 12 23
223 26.96 temperature 10 1440 > th dose dependent rect. 12 14
224 26.97 radiation 1 14400 > th dose independent rect. 18 12
267 27.00 humidity 90 14400 < th dose independent rect. 19 9
278 27.00 temperature 10 720 > th dose dependent rect. 23 19
282 27.01 temperature 10 1440 > th dose dependent sin 16 NA
293 27.01 temperature 30 720 < th dose dependent rect. 21 19
294 27.02 wind 3 43200 > th dose independent rect. 12 1
320 27.03 temperature 10 720 > th dose dependent rect. 1 19
329 27.04 radiation 1 14400 < th dose dependent rect. 18 8
339 27.04 temperature 10 720 > th dose dependent rect. 23 23
357 27.06 radiation 1 14400 < th dose dependent rect. 18 1
376 27.06 temperature 15 720 > th dose dependent rect. 23 21
378 27.07 humidity 90 14400 > th dose independent rect. 1 7
388 27.07 humidity 80 43200 > th dose dependent rect. 6 5
403 27.07 temperature 15 720 > th dose dependent rect. 1 21
423 27.09 wind 5 43200 < th dose dependent rect. 11 2
424 27.09 humidity 80 43200 > th dose dependent rect. 8 2
478 27.12 wind 3 43200 < th dose independent rect. 20 1
479 27.12 humidity 90 43200 > th dose independent rect. 6 1
482 27.12 humidity 80 43200 < th dose dependent rect. 22 1
498 27.12 temperature 15 720 > th dose dependent rect. 21 21
519 27.14 humidity 90 14400 > th dose independent sin 11 NA
528 27.14 humidity 90 14400 > th dose dependent rect. 3 5
543 27.15 temperature 30 1440 < th dose dependent sin 16 NA
592 27.17 wind 9 43200 > th dose dependent rect. 19 6
602 27.17 radiation 30 4320 > th dose dependent rect. 16 17
610 27.17 temperature 15 720 > th dose dependent rect. 1 23
611 27.17 temperature 10 720 > th dose dependent rect. 5 23
616 27.18 radiation 30 4320 > th dose dependent rect. 7 2
652 27.19 radiation 30 4320 < th dose independent rect. 16 17
669 27.19 temperature 10 720 > th dose dependent rect. 10 23
700 27.21 radiation 30 4320 < th dose independent rect. 2 7
708 27.21 temperature 10 720 > th dose dependent no NA NA
730 27.22 wind 3 43200 > th dose independent rect. 20 1
732 27.22 radiation 30 4320 < th dose independent rect. 4 5
762 27.23 humidity 90 43200 > th dose independent rect. 5 4
778 27.23 radiation 1 14400 < th dose dependent rect. 18 14
784 27.24 radiation 30 4320 < th dose independent rect. 6 3
794 27.24 wind 9 43200 > th dose dependent rect. 5 1
852 27.26 wind 9 43200 < th dose independent rect. 5 1
867 27.26 temperature 20 720 > th dose dependent sin 6 NA
886 27.27 wind 9 43200 > th dose independent rect. 19 2
924 27.28 humidity 80 43200 < th dose independent rect. 23 1
950 27.29 humidity 80 43200 > th dose independent rect. 9 2